Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Community analysis
    • Assembly5
    • Biological sequences5
    • Environmental microbiology5
    • Metagenomics5
    • Microbial ecology5
    • Microbiome5
    • Molecular community analysis5
    • Sequence analysis5
    • Sequence assembly5
    • Sequence databases5
    • Shotgun metagenomics5
    • Taxonomy4
    • Antimicrobial stewardship3
    • Epidemiology3
    • Exomes3
    • Genome annotation3
    • Genomes3
    • Genomics3
    • Medical microbiology3
    • Microbial genetics3
    • Microbial physiology3
    • Microbial surveillance3
    • Microbiological surveillance3
    • Microbiology3
    • Molecular infection biology3
    • Molecular microbiology3
    • Personal genomics3
    • Public health3
    • Public health and epidemiology3
    • Synthetic genomics3
    • Viral genomics3
    • Whole genomes3
    • DNA variation2
    • Function analysis2
    • Functional analysis2
    • Genetic variation2
    • Genomic variation2
    • Metatranscriptomics2
    • Mutation2
    • Polymorphism2
    • Protein function analysis2
    • Protein function prediction2
    • Somatic mutations2
    • AMR1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • Communicable disease1
    • DNA polymorphism1
    • De novo genome sequencing1
    • Disease1
    • Extensive drug resistance (XDR)1
    • Genome sequencing1
    • Infectious disease1
    • Microsatellites1
    • Multidrug resistance1
    • Multiple drug resistance (MDR)1
    • Multiresistance1
    • Pandrug resistance (PDR)1
    • Pathology1
    • RFLP1
    • SNP1
    • Single nucleotide polymorphism1
    • Total drug resistance (TDR)1
    • Transmissible disease1
    • VNTR1
    • Variable number of tandem repeat polymorphism1
    • WGS1
    • Whole genome resequencing1
    • Whole genome sequencing1
    • snps1
    • Show N_FILTERS more
    • Tool
    • FastQC
    • Galaxy19
    • taxonomy_krona_chart8
    • MetaPhlAn4
    • MultiQC4
    • kraken24
    • Bracken3
    • Cutadapt3
    • KrakenTools3
    • Newick Utilities3
    • fastp3
    • mothur3
    • BamTools2
    • Bandage2
    • Bowtie 22
    • GraPhlAn2
    • HUMAnN22
    • NanoPlot2
    • Recentrifuge2
    • SortMeRNA2
    • dRep2
    • export2graphlan2
    • humann2
    • metaQuantome2
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • Bakta1
    • CONCOCT1
    • CheckM1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • Combine Metaphlan and HUMAnN1
    • CoverM1
    • Falco1
    • FastTree1
    • Flye1
    • Krona1
    • MEGAHIT1
    • MLST1
    • MaxBin1
    • Medaka1
    • MetaBAT 21
    • Minimap21
    • NGSUtils1
    • QUAST1
    • Racon1
    • SAMtools1
    • SRA Software Toolkit1
    • Unicycler1
    • dada21
    • dastool1
    • ggplot21
    • metaspades1
    • miniasm1
    • phyloseq1
    • seqtk1
    • staramr1
    • Show N_FILTERS more
    • Content provider
    • GTN5
    • Show N_FILTERS more
    • Keyword
    • microgalaxy
    • Microbiome7
    • metagenomics2
    • metatranscriptomics2
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • amplicon1
    • assembly1
    • beer1
    • citizen science1
    • cyoa1
    • microbiome1
    • nanopore1
    • taxonomic abundance1
    • taxonomy1
    • Show N_FILTERS more
    • Competency level
    • Beginner5
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International5
    • Show N_FILTERS more
    • Target audience
    • Students5
    • Show N_FILTERS more
    • Author
    • Bérénice Batut5
    • Paul Zierep3
    • Emma Leith2
    • Engy Nasr2
    • Polina Polunina2
    • Pratik Jagtap2
    • Praveen Kumar2
    • Ray Sajulga2
    • Saskia Hiltemann2
    • Subina Mehta2
    • Siyu Chen1
    • Teresa Müller1
    • Vini Salazar1
    • Show N_FILTERS more
    • Contributor
    • Bérénice Batut5
    • Helena Rasche5
    • Saskia Hiltemann5
    • Björn Grüning4
    • Paul Zierep4
    • Christine Oger2
    • Cristóbal Gallardo2
    • Engy Nasr2
    • Deepti Varshney1
    • Hans-Rudolf Hotz1
    • Natalie Whitaker-Allen1
    • Nuwan Goonasekera1
    • Polina Polunina1
    • Siyu Chen1
    • Teresa Müller1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Resource type
    • e-learning5
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets5
    • Associated Workflows5
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Community analysis

and Tools: FastQC

and Keywords: microgalaxy

5 materials found
  • e-learning

    Identification of the micro-organisms in a beer using Nanopore sequencing

    • Beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Microbiome beer citizen science metagenomics microgalaxy nanopore
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • Beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data

    • Beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data (short)

    • Beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • e-learning

    Assembly of metagenomic sequencing data

    • Beginner
    Metagenomics Sequence assembly Microbial ecology Microbiome assembly metagenomics microgalaxy
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.