Materials - TeSSHub

Filter Clear filters
- Date added
- In the last 24 hours
- In the last 1 week
- In the last 1 month
- Scientific topic
- Algorithms107
- Computer programming107
- Data structures107
- Programming languages107
- Software development107
- Software engineering107
- FAIR data88
- Findable, accessible, interoperable, reusable data88
- Data management86
- Metadata management86
- Research data management (RDM)86
- Genome annotation83
- Exomes75
- Genomes75
- Genomics75
- Personal genomics75
- Synthetic genomics75
- Viral genomics75
- Whole genomes75
- Biodiversity68
- Comparative transcriptomics66
- Transcriptome66
- Transcriptomics66
- Bayesian methods51
- Biostatistics51
- Descriptive statistics51
- Gaussian processes51
- Inferential statistics51
- Markov processes51
- Multivariate statistics51
- Probabilistic graphical model51
- Probability51
- Statistics51
- Statistics and probability51
- Bottom-up proteomics41
- Discovery proteomics41
- MS-based targeted proteomics41
- MS-based untargeted proteomics41
- Metagenomics41
- Metaproteomics41
- Peptide identification41
- Protein and peptide identification41
- Proteomics41
- Quantitative proteomics41
- Shotgun metagenomics41
- Targeted proteomics41
- Top-down proteomics41
- Bioinformatics40
- Biological sequences36
- Sequence analysis36
- Sequence databases36
- Assembly34
- Community analysis34
- Environmental microbiology34
- Microbial ecology34
- Microbiome34
- Molecular community analysis34
- Sequence assembly34
- Computational ecology30
- Ecoinformatics30
- Ecological informatics30
- Ecology30
- Ecosystem science30
- Diffraction experiment27
- Imaging27
- Microscopy27
- Microscopy imaging27
- Optical super resolution microscopy27
- Photonic force microscopy27
- Photonic microscopy27
- Data mining24
- Pattern recognition24
- Antimicrobial stewardship22
- Medical microbiology22
- Microbial genetics22
- Microbial physiology22
- Microbial surveillance22
- Microbiological surveillance22
- Microbiology22
- Molecular infection biology22
- Molecular microbiology22
- DNA variation21
- Genetic variation21
- Genomic variation21
- Mutation21
- Polymorphism21
- Somatic mutations21
- Taxonomy18
- Active learning16
- Ensembl learning16
- Kernel methods16
- Knowledge representation16
- Machine learning16
- Neural networks16
- Open science16
- Recommender system16
- Reinforcement learning16
- Supervised learning16
- Unsupervised learning16
- Epigenomics14
- Show N_FILTERS more
- Operation
- Data handling32
- File handling32
- File processing32
- Processing32
- Report handling32
- Utility operation32
- Data analysis11
- Data extraction4
- Data retrieval4
- Data retrieval (metadata)4
- Metadata retrieval4
- Retrieval4
- Data formatting2
- Data management planning2
- Data reformatting2
- Database search2
- File format conversion2
- File formatting2
- File reformatting2
- Format conversion2
- Search2
- Annotation1
- Data brokering1
- Data deposition1
- Data deposition brokering1
- Data submission1
- Database deposition1
- Database retrieval1
- Database submission1
- Quality control1
- Query1
- Query and retrieval1
- RNA-Seq analysis1
- Validation1
- Show N_FILTERS more
- Tool
- Galaxy369
- FastQC35
- SAMtools26
- MultiQC25
- BWA21
- BEDTools17
- fastp16
- scikit-learn16
- JBrowse15
- REDCap15
- SCANPY15
- Falco14
- DeepTools13
- ggplot213
- BLAST12
- Cutadapt12
- QUAST12
- BUSCO11
- Galaxy Image Analysis11
- GEMINI10
- STAR10
- scikit-image10
- taxonomy_krona_chart10
- Data Stewardship Wizard9
- NanoPlot9
- Trimmomatic9
- Bandage8
- FASTX-Toolkit8
- FreeBayes8
- BCFtools7
- BamTools7
- msConvert7
- seqtk7
- Biopython6
- Flye6
- HISAT26
- MAFFT6
- MaxQuant6
- Minimap26
- Open Babel6
- RStudio6
- Trim Galore6
- Unicycler6
- Workflow4Metabolomics6
- gffread6
- DESeq25
- Galactic Circos5
- MetaPhlAn5
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
- SRA Software Toolkit5
- anndata5
- annotatemyids5
- compute_sequence_length5
- kraken25
- xcms5
- Bowtie 24
- Bwa-mem24
- CellProfiler4
- Diamond4
- GOseq4
- KrakenTools4
- MACS4
- MSstats4
- Merqury4
- Newick Utilities4
- RDMkit4
- Salmon4
- StringTie4
- The Protein Data Bank (PDB)4
- UniProt4
- bx-python4
- gffcompare4
- mothur4
- snpEff4
- Apollo3
- Bakta3
- Bracken3
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DISEASES3
- DropletUtils3
- European Nucleotide Archive (ENA)3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterProScan (EBI)3
- OMArk3
- QualiMap3
- RDKit3
- SeqCode3
- SortMeRNA3
- Stacks3
- UCSC Genome Browser Utilities3
- Vcflib3
- dRep3
- export2graphlan3
- gfastats3
- humann3
- iqtree3
- Show N_FILTERS more
- Standard database or policy
- European Nucleotide Archive2
- FAIRsharing2
- Ontology Lookup Service2
- PRoteomics IDEntifications database2
- RDA DMP Common Standard for Machine-Actionable Data Management Plans2
- STRING: functional protein association networks2
- Search Tool for Interactions of Chemicals2
- The European Genome-phenome Archive2
- Bioschemas1
- Cellosaurus1
- Common Workflow Language1
- FAIRtracks1
- Investigation Study Assay JSON1
- Investigation Study Assay Tabular1
- Minimum Information about Plant Phenotyping Experiment1
- ModelArchive1
- Research Object Crate1
- Resource Identification Portal 1
- Schema.org1
- The Observational Medical Outcomes Partnership Common Data Model1
- UniProt Knowledgebase1
- Worldwide Protein Data Bank1
- Zenodo 1
- data.eNanoMapper.net1
- eNanoMapper Ontology1
- Show N_FILTERS more
- Content provider
- GTN711
- Australian BioCommons88
- Glittr.org76
- ELXIR-UK DaSH54
- ERGA Knowledge Hub49
- DTLS - Dutch Techcentre For Life Sciences33
- Canadian Bioinformatics Workshops25
- Coding for Reproducible Research (CfRR)19
- ELIXIR Portugal16
- SIB Swiss Institute of Bioinformatics14
- VIB Training & Conferences12
- ELIXIR11
- ELIXIR Estonia10
- PerMedCoE6
- Barcelona Supercomputing Center (BSC)4
- ELIXIR Luxembourg4
- IFB French Institute of Bioinformatics4
- ELIXIR Norway3
- Novo Nordisk Foundation Center for Protein Research3
- University of Edinburgh3
- ELIXIR: The Czech Republic Node2
- European Bioinformatics Institute (EBI)2
- NanoCommons2
- SciLifeLab2
- Software Sustainability Institute2
- Centre for Digital Life Norway1
- Cloud-SPAN1
- Department of Bioinformatics - BiGCaT, Maastricht University1
- EOSC4Cancer1
- Health-RI1
- InterMine1
- Pattern Institute1
- Seqera1
- University of Cambridge Bioinformatics Training1
- de.NBI1
- eNanoMapper1
- proteomicsML1
- Show N_FILTERS more
- Keyword
- Bioinformatics69
- Galaxy Server administration68
- jupyter-notebook54
- Foundations of Data Science51
- Transcriptomics50
- biodiversity47
- Development in Galaxy45
- Statistics and machine learning44
- Single Cell42
- Proteomics41
- microgalaxy41
- Genomics40
- Data management34
- Genome Annotation32
- FAIR Data, Workflows, and Research31
- Ecology30
- FAIR data30
- Microbiome30
- data management30
- Contributing to the Galaxy Training Material28
- Using Galaxy and Managing your Data28
- Assembly25
- Data reuse24
- FAIR24
- metagenomics24
- R23
- Workflows23
- RDM21
- ansible21
- FAIR principles20
- Imaging20
- programming20
- CfRR19
- FAIR Data19
- Metadata19
- Variant Analysis19
- git-gat19
- reproducible research19
- scientific computing19
- Open Science18
- interactive-tools18
- Climate17
- Data analysis17
- Teaching and Hosting Galaxy training17
- fair17
- work-in-progress17
- Data sharing16
- Genome annotation16
- HemaFAIR16
- Introduction to Galaxy Analyses16
- data stewardship16
- jbrowse116
- prokaryote16
- sensitive data15
- Epigenetics15
- Next generation sequencing15
- REDCap15
- RNA-seq15
- Reproducibility15
- earth-system15
- elixir15
- gmod15
- Online Repository14
- Research Data Management14
- Data mining13
- Metabolomics13
- Python13
- Sequence analysis13
- Deep learning12
- Machine learning12
- assembly12
- cyoa12
- metadata12
- paper-replication12
- Data management planning11
- Analysis11
- European research projects11
- MIGHTS11
- Nextflow11
- REMBI11
- covid1911
- Evolution10
- Image segmentation10
- eukaryote10
- metabolomics10
- nanopore10
- ocean10
- plants10
- workflows10
- 10x9
- Computational chemistry9
- DDA9
- Data processing9
- Version control9
- Visualisation9
- ai-ml9
- label-free9
- one-health9
- Galaxy Community Building8
- Genome assembly8
- Show N_FILTERS more
- Competency level
- Beginner700
- Not specified351
- Intermediate165
- Advanced22
- Show N_FILTERS more
- Licence
- Creative Commons Attribution 4.0 International
- License Not Specified1778
- Creative Commons Attribution Share Alike 4.0 International139
- MIT License118
- GNU General Public License v3.0 only50
- Creative Commons Zero v1.0 Universal40
- Creative Commons Attribution Non Commercial Share Alike 4.0 International36
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International24
- Apache License 2.018
- Other (Not Open)16
- BSD 3-Clause "New" or "Revised" License14
- Creative Commons Attribution Non Commercial 4.0 International10
- Creative Commons Attribution 1.0 Generic5
- Creative Commons Attribution No Derivatives 4.0 International3
- Artistic License 2.02
- GNU Affero General Public License v3.0 only2
- GNU General Public License v2.0 only2
- Creative Commons Attribution 2.0 Generic1
- Creative Commons Attribution No Derivatives 2.0 Generic1
- Creative Commons Attribution Non Commercial 2.0 Generic1
- Do What The F*ck You Want To Public License1
- Open Data Commons Attribution License v1.01
- Other (Open)1
- The Unlicense1
- Show N_FILTERS more
- Target audience
- Students573
- Galaxy Administrators113
- Instructors53
- Researchers35
- Scientific community26
- PhD candidate24
- Data stewards20
- Academia/ Research Institution16
- Data Scientist16
- Data managers16
- Industry16
- Non-Profit Organisation16
- Healthcare13
- Bioinformaticians12
- Biologists10
- Life Science Researchers10
- PhD Students8
- Researcher8
- Clinicians7
- PhD candidates7
- Master students6
- Beginner5
- Life scientists with programming skills5
- bioinformaticians5
- data stewards5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Bioinformatician4
- Data Managers4
- Data Scientists4
- Graduate Students4
- PI4
- Post Docs4
- project manager4
- Biologists with little or no prior computational experience3
- PhD students3
- Scientists3
- data steward / data manager3
- Academics2
- Beginners2
- Bench biologists2
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Chemists2
- Computational biologists2
- Curators2
- Data Steward2
- Database users2
- Graduate students2
- Industry Professionals2
- Life Scientists2
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members2
- Postdocs and Staff members2
- Principal Investigators (PIs)2
- Research scientists2
- Trainers2
- life science researchers2
- life scientists2
- plant researchers2
- policy officer2
- Anyone1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Beginner informatics1
- Bioinformatician, Bioanalysts1
- Clinical Scientists1
- DMP writers1
- Data Manager1
- Data scientists1
- Developers wanting to distribute their MPI dependent software1
- ECR1
- EIP members1
- ELIXIR members1
- Early Career Researcher1
- General Interest1
- Graduates1
- HPC system maintainers wanting to enable MPI containers1
- IT support1
- Imaging Core Facility Staff1
- Librarians1
- Life scientists1
- Life scientists with no or little knowledge of the ISMARA tool.1
- Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.1
- Modellers1
- Node Coordinators1
- Novice users of HPC and anyone who expects to need to use HPC systems at some stage in their research1
- OMERO trainers1
- OMERO users1
- PhD1
- PhD Students or young researchers in molecular biology and/or genetics with little or no background in bioinformatics.1
- PhD students in Genomics datascience1
- Policy makers1
- Post docs1
- Post-Doctoral Fellows1
- PostDocs1
- Postdoctoral Researchers1
- Postdoctoral researchers1
- Principal Investigators1
- Professor1
- Researcher in life sciences1
- Student1
- Show N_FILTERS more
- Author
- Helena Rasche127
- Bérénice Batut111
- Saskia Hiltemann65
- Björn Grüning49
- Simon Gladman33
- Yvan Le Bras29
- Anthony Bretaudeau28
- Anton Nekrutenko28
- Nate Coraor27
- SIB Swiss Institute of Bioinformatics26
- Subina Mehta26
- Donat Agosti25
- John Chilton25
- Julia Giora25
- Nicola Soranzo25
- Plazi Verein25
- The Carpentries23
- Anne Fouilloux21
- Fotis E. Psomopoulos21
- Saskia Lawson-Tovey20
- Coding for Reproducible Research Initiative19
- Marie Josse19
- Wendi Bacon19
- Bazante Sanders18
- Katarzyna Kamieniecka18
- Krzysztof Poterlowicz18
- Laura Cooper17
- Mehmet Tekman17
- Paul Zierep16
- The Gulbenkian Training Programme in Bioinformatics16
- Cristóbal Gallardo15
- Samaha, Georgina15
- Pratik Jagtap14
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- Julia Jakiela13
- Maria Doyle13
- Mijke Jetten13
- Monique Zahn13
- Wolfgang Maier13
- Anup Kumar12
- James Johnson12
- Katherine Do12
- Marius van den Beek12
- Melanie Föll12
- Simon Bray12
- Khaled Jum'ah11
- Pavankumar Videm11
- Daniel Blankenberg10
- Martin Čech10
- Anika Erxleben9
- Celia van Gelder9
- Egon Willighagen9
- Praveen Kumar9
- Anne Pajon8
- Avans Hogeschool8
- Diana Chiang Jurado8
- Diana Pilvar8
- Emma Leith8
- Fred Hutch Data Science Lab8
- Joachim Wolff8
- Kaivan Kamali8
- Lucille Delisle8
- Robert Andrews8
- Sara Morsy8
- Stéphanie Robin8
- Timothy J. Griffin8
- Alex Ostrovsky7
- Alexandre Cormier7
- Anna Syme7
- Beecroft, Sarah7
- Branka Franicevic7
- Christopher Barnett7
- Erwan Corre7
- Florian Christoph Sigloch7
- Gildas Le Corguillé7
- Jeremy Goecks7
- Junhao Qiu7
- Laura Leroi7
- Leonid Kostrykin7
- Matthias Fahrner7
- Michael Charleston7
- Nadia Goué7
- Patricia Palagi7
- Paulo Cilas Morais Lyra Junior7
- Ray Sajulga7
- Alexander Botzki6
- Allegra Via6
- Andrew Mason6
- Beatriz Serrano-Solano6
- Clemens Blank6
- Coline Royaux6
- Deshpande, Nandan6
- ELIXIR Goblet Train the Trainers6
- Morgan Howells6
- Philippe Rocca-Serra6
- Polina Polunina6
- Solenne Correard6
- Valentin Loux6
- Show N_FILTERS more
- Contributor
- Saskia Hiltemann588
- Helena Rasche501
- Björn Grüning426
- Bérénice Batut254
- Nicola Soranzo171
- Martin Čech128
- Anthony Bretaudeau106
- Cristóbal Gallardo104
- Niall Beard90
- Wendi Bacon77
- Nate Coraor70
- Armin Dadras65
- Gildas Le Corguillé63
- Marius van den Beek61
- William Durand59
- Simon Gladman53
- Pavankumar Videm48
- Teresa Müller48
- Beatriz Serrano-Solano47
- Lucille Delisle46
- Mehmet Tekman46
- Yvan Le Bras44
- Robert Andrews40
- Marie Josse36
- Wolfgang Maier36
- Melanie Föll35
- Munazah Andrabi34
- Anup Kumar33
- Simon Bray28
- Subina Mehta28
- Anne Fouilloux25
- Donny Vrins23
- Maria Doyle23
- Peter van Heusden23
- Julia Jakiela20
- Leonid Kostrykin20
- Bazante Sanders19
- Tristan Reynolds19
- Anton Nekrutenko18
- Deepti Varshney17
- Geert van Geest17
- Paul Zierep17
- Delphine Lariviere16
- Khaled Jum'ah16
- Petros Kountouris16
- Pratik Jagtap16
- Marisa Loach15
- Daniela Schneider14
- David López14
- Mira Kuntz14
- Mélanie Petera14
- Diana Chiang Jurado13
- Matthias Bernt13
- Candace Savonen12
- Pablo Moreno12
- Timothy J. Griffin12
- Carrie Wright11
- Dave Clements11
- Gianmauro Cuccuru11
- Stéphanie Robin11
- jhudsl-robot11
- Katarzyna Kamieniecka10
- Wandrille D.10
- actions-user10
- Anna Syme9
- John Chilton9
- Kate Isaac9
- Mallory Freeberg9
- Paul De Geest9
- Alexandre Cormier8
- Amirhossein Naghsh Nilchi8
- Florian Heyl8
- Kaivan Kamali8
- Melissa Burke8
- Solenne Correard8
- Verena Moosmann8
- Allyson Lister7
- Christopher Barnett7
- Daniel Sobral7
- Enis Afgan7
- Hans-Rudolf Hotz7
- Katherine Do7
- Morgan Howells7
- Tomas Klingström7
- Bert Droesbeke6
- Catherine Bromhead6
- Clemens Blank6
- Deepak Tanwar6
- Ekaterina Polkh6
- Florian Christoph Sigloch6
- Linelle Abueg6
- Paulo Cilas Morais Lyra Junior6
- Riccardo Massei6
- Alex Ostrovsky5
- Alireza Khanteymoori5
- Andrea Bagnacani5
- Clea Siguret5
- Elizabeth Humphries5
- Fabio Cumbo5
- John Davis5
- Show N_FILTERS more
- Resource type
- e-learning556
- slides182
- tutorial47
- Presentation46
- Video39
- lessons37
- Training materials32
- Slidedeck27
- exercise25
- hands-on tutorial23
- video21
- Exercise17
- Documentation16
- Handout16
- Lecture16
- Scripts16
- Tutorial12
- Slides11
- Online material4
- PDF4
- Webinar4
- tutorials4
- Recorded webinar3
- course materials3
- slideck/ presentation3
- Course materials2
- Learning pathway2
- Series of videos2
- online course2
- youtube video2
- Carpentries style curriculum1
- Coding1
- Computational Biology1
- E-Learning1
- Jupyter notebooks1
- Open educational resource1
- Poster1
- Recording1
- Workshop1
- additional reading1
- case studies1
- didactic activities1
- e-Learning1
- hackathon1
- handbook1
- implementation guidelines1
- scripts1
- slide deck / presentation1
- Show N_FILTERS more
- Related resource
- Associated Training Datasets331
- Associated Workflows308
- Jupyter Notebook (with Solutions)51
- Jupyter Notebook (without Solutions)51
- Quarto/RMarkdown Notebook6
- DMPonline2
- DisProt2
- Research Data Management in Life Sciences2
- Slides2
- Workshop recording2
- ARROWSMITH1
- Data Stewardship Wizard1
- Data Visualisation (theory) 1
- Event1
- FAIR for busy biologists1
- FAIR in (biological) practice1
- R basics1
- RDMkit1
- RNA-seq data package1
- Ready For BioData Management?1
- Video Walkthrough of the Poster1
- Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
- Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
- compareMS21
- recorded guidance on how to install a SciNote account1
- recorded intro to hackathon1
- recorded presentation on integration of ELNs in nanosciences1
- seq-seq-pan1
- Show N_FILTERS more
- Node
- Switzerland141
- United Kingdom62
- Netherlands52
- Estonia19
- Portugal18
- Cyprus16
- Belgium14
- France7
- EMBL-EBI5
- Luxembourg5
- Norway5
- Czech Republic4
- Spain4
- Denmark3
- Germany3
- Sweden3
- Finland2
- Italy2
- Greece1
- Slovenia1
- Show N_FILTERS more
- Collection
- HemaFAIR Training: Applying FAIR Principles in Hematology Research16
- ELIXIR Biodiversity Community15
- RDMbites: REDCap14
- RDMbites: Data management essentials13
- RDMbites: Image data10
- Elements of Data Management7
- PINK project7
- SARS-CoV-2 : Studying a new virus5
- RDMbites: Equality, Diversity, Inclusion and Justice in RDM4
- RDMbites: Sensitive data4
- ELIXIR SIS-Containers - collection of training materials3
- RDMbites: Sequencing data3
- ELIXIR Systems Biology Community: training events and materials2
- ELIXIR Toxicology Community2
- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- ELIXIR hCNV community - collection of courses and materials.1
- ELIXIR Federated Human Data Community1
- PHENotyping and EnviroTyping (PHENET training collection)1
- Show N_FILTERS more
- Status
- Active207
- Under development2
- Show N_FILTERS more
Show materials from all spaces
Show disabled materials
Show materials with broken links
Show archived materials

Training materials

Register training material

Licence: Creative Commons Attribution 4.0 International

1238 materials found

Results per page:

1
2
3
4
5
6
7
8
9
10
11
12
…
123
124