Training materials
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ELIXIR TeSS
e-learning
Metatranscriptomics analysis using microbiome RNA-seq data (short)
• BeginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
ELIXIR TeSS
e-learning
Antibiotic resistance detection
• BeginnerMetagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial resistance Microbiome amr … -
ELIXIR TeSS
e-learning
Clean and manage Sanger sequences from raw files to aligned consensus
• BeginnerSequence analysis Sequence analysis -
ELIXIR TeSS
e-learning
Screening assembled genomes for contamination using NCBI FCS
• BeginnerSequence analysis Sequence analysis -
ELIXIR TeSS
e-learning
Scanpy Parameter Iterator
• BeginnerSingle Cell single-cell -
ELIXIR TeSS
e-learning
Ploting a Microbial Genome with Circos
•• IntermediateVisualisation -
ELIXIR TeSS
e-learning
CUT&RUN data analysis
• BeginnerEpigenomics Epigenetics -
ELIXIR TeSS
e-learning
Secondary metabolite discovery
• BeginnerGenomics Genome Annotation -
ELIXIR TeSS
e-learning
Very Short Introductions: QC
• BeginnerIntroduction to Galaxy Analyses -
ELIXIR TeSS
slides
Identification of non-canonical ORFs and their potential biological function
• BeginnerTranscriptomics Transcriptomics