Training materials
Scientific topics: Microbial genetics
and Related resources: Associated Workflows
18 materials found
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ELIXIR TeSS
e-learning
Refining Genome Annotations with Apollo (prokaryotes)
•• IntermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 biodiversity gmod jbrowse1 microgalaxy … -
ELIXIR TeSS
e-learning
Genome annotation with Prokka
• BeginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
ELIXIR TeSS
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• BeginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
ELIXIR TeSS
e-learning
Making sense of a newly assembled genome
• BeginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
ELIXIR TeSS
e-learning
Unicycler Assembly
• BeginnerSequence assembly Genomics Microbiology Assembly biodiversity microgalaxy prokaryote -
ELIXIR TeSS
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• BeginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
ELIXIR TeSS
e-learning
Tree thinking for tuberculosis evolution and epidemiology
• BeginnerEvolutionary biology Genomics Microbiology Phylogeny Infectious disease Evolution microgalaxy one-health phylogenetics prokaryote -
ELIXIR TeSS
e-learning
Identifying tuberculosis transmission links: from SNPs to transmission clusters
•• IntermediateEvolutionary biology Genomics Microbiology Infectious disease DNA polymorphism Evolution microgalaxy one-health prokaryote
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