Training materials
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e-learning
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• BeginnerSequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology Sequence analysis bacteria illumina microgalaxy -
e-learning
Checking expected species and contamination in bacterial isolate
• BeginnerEcology Biodiversity Whole genome sequencing Genomics Microbiology Microbial ecology Ecology bacteria illumina microgalaxy -
e-learning
Genome Annotation
• BeginnerGenomics Genome Annotation prokaryote work-in-progress -
e-learning
Creating an Official Gene Set
• BeginnerGenomics Genome Annotation apollo2 gmod work-in-progress -
e-learning
Identification of AMR genes in an assembled bacterial genome
• BeginnerGenomics Whole genome sequencing Public health and epidemiology Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod … -
e-learning
Bacterial Genome Annotation
• BeginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod … -
e-learning
ERGA post-assembly QC
• BeginnerSequence assembly Genomics Biodiversity Assembly QC animals assembly biodiversity genome plants -
e-learning
Secondary metabolite discovery
• BeginnerGenomics Genome Annotation -
e-learning
Methods and resources for omics studies: A curated collection of EMBL-EBI on-demand training
Omics Data visualisation Genomics Proteomics Metabolomics Transcriptomics Spatial omics multi-omics data integration transcriptomics
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e-learning
ViralZone: Studying viral diversity
• BeginnerVirology Genomics Molecular biology virology