Training materials
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e-learning
Assembly of metagenomic sequencing data
• BeginnerMetagenomics Sequence assembly Microbial ecology Microbiome assembly metagenomics microgalaxy -
e-learning
ERGA post-assembly QC
• BeginnerSequence assembly Genomics Biodiversity Assembly QC animals assembly biodiversity genome plants -
e-learning
Large genome assembly and polishing
• BeginnerSequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing -
e-learning
Metagenomics bioinformatics: A practical introduction
Metagenomic sequencing Metagenomics Microbiology Sequence assembly Microbial DNA
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e-learning
Genome Assembly Quality Control
•• IntermediateSequence assembly Biodiversity Data quality management Assembly assembly biodiversity quality control -
slides
Genome assembly quality control.
• BeginnerSequence assembly Assembly -
e-learning
M. tuberculosis Variant Analysis
•• IntermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote … -
e-learning
Microbial Variant Calling
• BeginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy … -
e-learning
Calling variants in non-diploid systems
• BeginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• BeginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy …