Training materials
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e-learning
Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines
• BeginnerImaging IDR dataset Imaging Overlay Rasterisation Spot detection -
e-learning
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
•• IntermediateImaging Data handling Data management Data sharing Imaging ROI selection -
e-learning
Tracking of mitochondria and capturing mitoflashes
•• IntermediateImaging Imaging Isolated object tracking Temporal analysis Time-lapse data -
slides
Contribute to the BioImage.IO models
• BeginnerImaging Image analysis using Deep Learning bioimageio image analysis -
e-learning
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
• BeginnerImaging Bioimaging Data management FAIR Data, Workflows, and Research Metadata -
e-learning
FAIR Bioimage Metadata
• BeginnerImaging Bioimaging Data management FAIR Data, Workflows, and Research Metadata -
slides
BioImage Model Zoo: Advanced models in one-click
• BeginnerImaging Image analysis using Deep Learning bioimageio image analysis -
slides
Welcome to the BioImage Model Zoo
• BeginnerImaging Image analysis using Deep Learning bioimageio image analysis -
e-learning
End-to-End Tissue Microarray Image Analysis with Galaxy-ME
•• IntermediateImaging Image segmentation Imaging Tissue imaging -
e-learning
Analyse HeLa fluorescence siRNA screen
•• IntermediateImaging Fluorescence microscopy High-throughput screening Image segmentation Image thresholding Imaging Object feature extraction Overlay