Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Microbial genetics
    • Algorithms69
    • Computer programming69
    • Data structures69
    • Programming languages69
    • Software development69
    • Software engineering69
    • Exomes48
    • Genome annotation48
    • Genomes48
    • Genomics48
    • Personal genomics48
    • Synthetic genomics48
    • Viral genomics48
    • Whole genomes48
    • Biodiversity43
    • Bayesian methods40
    • Biostatistics40
    • Descriptive statistics40
    • Gaussian processes40
    • Inferential statistics40
    • Markov processes40
    • Multivariate statistics40
    • Probabilistic graphical model40
    • Probability40
    • Statistics40
    • Statistics and probability40
    • Bottom-up proteomics38
    • Comparative transcriptomics38
    • Discovery proteomics38
    • MS-based targeted proteomics38
    • MS-based untargeted proteomics38
    • Metaproteomics38
    • Peptide identification38
    • Protein and peptide identification38
    • Proteomics38
    • Quantitative proteomics38
    • Targeted proteomics38
    • Top-down proteomics38
    • Transcriptome38
    • Transcriptomics38
    • Biological sequences36
    • Sequence analysis36
    • Sequence databases36
    • Community analysis33
    • Environmental microbiology33
    • Metagenomics33
    • Microbial ecology33
    • Microbiome33
    • Molecular community analysis33
    • Shotgun metagenomics33
    • Computational ecology30
    • Ecoinformatics30
    • Ecological informatics30
    • Ecology30
    • Ecosystem science30
    • Assembly27
    • Data management27
    • Metadata management27
    • Research data management (RDM)27
    • Sequence assembly27
    • Antimicrobial stewardship26
    • Medical microbiology26
    • Microbial physiology26
    • Microbial surveillance26
    • Microbiological surveillance26
    • Microbiology26
    • Molecular infection biology26
    • Molecular microbiology26
    • DNA variation22
    • Genetic variation22
    • Genomic variation22
    • Mutation22
    • Polymorphism22
    • Somatic mutations22
    • Diffraction experiment20
    • Imaging20
    • Microscopy20
    • Microscopy imaging20
    • Optical super resolution microscopy20
    • Photonic force microscopy20
    • Photonic microscopy20
    • Rare diseases20
    • Bioinformatics17
    • Taxonomy17
    • Exometabolomics13
    • LC-MS-based metabolomics13
    • MS-based metabolomics13
    • MS-based targeted metabolomics13
    • MS-based untargeted metabolomics13
    • Mass spectrometry-based metabolomics13
    • Metabolites13
    • Metabolome13
    • Metabolomics13
    • Metabonomics13
    • NMR-based metabolomics13
    • Protein structure12
    • Protein structure analysis12
    • Protein tertiary structure12
    • FAIR data11
    • Show N_FILTERS more
    • Tool
    • Galaxy22
    • JBrowse5
    • FastQC3
    • snippy3
    • BCFtools2
    • Bakta2
    • Bandage2
    • Bracken2
    • COMBAT-TB Workbench2
    • Falco2
    • NanoPlot2
    • QUAST2
    • Recentrifuge2
    • Unicycler2
    • staramr2
    • tbl2gff32
    • Apollo1
    • BEDTools1
    • BWA1
    • BamTools1
    • Bowtie1
    • Bwa-mem21
    • CheckM1
    • Circos1
    • DeepTools1
    • FastTree1
    • Filtlong1
    • Flye1
    • FreeBayes1
    • Galactic Circos1
    • ISEScan1
    • Integron Finder1
    • Jvarkit1
    • Minimap21
    • NCBI Datasets1
    • PPanGGOLiN1
    • PlasmidFinder1
    • Polypolish1
    • QualiMap1
    • RAxML1
    • Racon1
    • SAMtools1
    • TRANSIT1
    • Trimmomatic1
    • Vcflib1
    • compute_sequence_length1
    • dRep1
    • fastp1
    • ggplot21
    • miniasm1
    • shovill1
    • tb-profiler1
    • Show N_FILTERS more
    • Content provider
    • GTN22
    • European Bioinformatics Institute (EBI)4
    • Show N_FILTERS more
    • Keyword
    • microgalaxy20
    • prokaryote9
    • Genome Annotation8
    • gmod6
    • jbrowse16
    • illumina5
    • Assembly4
    • bacteria4
    • one-health4
    • Evolution3
    • Variant Analysis3
    • amr3
    • assembly3
    • work-in-progress3
    • Microbiome2
    • biodiversity2
    • nanopore2
    • AMR1
    • Bacteria1
    • Ecology1
    • Metabolites1
    • Metabolome1
    • Microbial DNA1
    • Open access1
    • Pathogens1
    • Pathogens Portal1
    • Sequence analysis1
    • Small molecules1
    • apollo21
    • essential genes1
    • microbial ecosystems1
    • microbiome1
    • phylogenetics1
    • plasmids1
    • tnseq1
    • tuberculosis1
    • Show N_FILTERS more
    • Competency level
    • Beginner19
    • Not specified4
    • Intermediate3
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International22
    • License Not Specified4
    • Show N_FILTERS more
    • Target audience
    • Students22
    • Clinicians4
    • PhD students4
    • Show N_FILTERS more
    • Author
    • Bérénice Batut12
    • Hélène Chiapello4
    • Simon Gladman4
    • Valentin Loux4
    • Anton Nekrutenko3
    • Bazante Sanders3
    • Delphine Lariviere3
    • Anna Syme2
    • Christoph Stritt2
    • Daniela Brites2
    • Galo A. Goig2
    • Helena Rasche2
    • Torsten Seemann2
    • Alex Ostrovsky1
    • Anthony Bretaudeau1
    • Clea Siguret1
    • Didier Debroas1
    • Guillaume Gautreau1
    • Mateo Boudet1
    • Nadia Goué1
    • Nathan Dunn1
    • Peter van Heusden1
    • Saskia Hiltemann1
    • Thoba Lose1
    • Willem de Koning1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann18
    • Björn Grüning17
    • Bérénice Batut16
    • Helena Rasche16
    • Anthony Bretaudeau14
    • Tristan Reynolds6
    • Niall Beard5
    • Nicola Soranzo5
    • Wolfgang Maier5
    • Peter van Heusden4
    • Anton Nekrutenko3
    • Bazante Sanders3
    • Cristóbal Gallardo3
    • Maria Doyle3
    • Miaomiao Zhou3
    • Teresa Müller3
    • Christoph Stritt2
    • Clea Siguret2
    • Deepti Varshney2
    • Delphine Lariviere2
    • Gildas Le Corguillé2
    • Mélanie Petera2
    • Nate Coraor2
    • Paul Zierep2
    • Simon Gladman2
    • Verena Moosmann2
    • William Durand2
    • pimarin2
    • Alex Ostrovsky1
    • Anna Syme1
    • Enis Afgan1
    • Galo A. Goig1
    • Jennifer Hillman-Jackson1
    • Linelle Abueg1
    • Lucille Delisle1
    • Matúš Kalaš1
    • Simon Bray1
    • Stéphanie Robin1
    • Vijay1
    • Willem de Koning1
    • mmiladi1
    • Show N_FILTERS more
    • Resource type
    • e-learning
    • Recorded webinar12
    • Tutorial1
    • Video1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets22
    • Associated Workflows18
    • Show N_FILTERS more
    • Node
    • EMBL-EBI4
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Microbial genetics

and Resource type: e-learning

26 materials found
  • e-learning

    Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

    • Beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy …
  • e-learning

    Making sense of a newly assembled genome

    • Beginner
    Sequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote
  • e-learning

    Unicycler Assembly

    • Beginner
    Sequence assembly Genomics Microbiology Assembly biodiversity microgalaxy prokaryote
  • e-learning

    Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

    • Beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
  • e-learning

    Tree thinking for tuberculosis evolution and epidemiology

    • Beginner
    Evolutionary biology Genomics Microbiology Phylogeny Infectious disease Evolution microgalaxy one-health phylogenetics prokaryote
  • e-learning

    Identifying tuberculosis transmission links: from SNPs to transmission clusters

    •• Intermediate
    Evolutionary biology Genomics Microbiology Infectious disease DNA polymorphism Evolution microgalaxy one-health prokaryote
  • 1
  • 2
  • 3
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.