Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Data management226
    • Metadata management226
    • Research data management (RDM)226
    • Genome annotation219
    • Exomes198
    • Genomes198
    • Genomics198
    • Personal genomics198
    • Synthetic genomics198
    • Viral genomics198
    • Whole genomes198
    • Comparative transcriptomics186
    • Transcriptome186
    • Transcriptomics186
    • FAIR data160
    • Findable, accessible, interoperable, reusable data160
    • R150
    • R program150
    • R script150
    • Bayesian methods128
    • Biostatistics128
    • Descriptive statistics128
    • Gaussian processes128
    • Inferential statistics128
    • Markov processes128
    • Multivariate statistics128
    • Probabilistic graphical model128
    • Probability128
    • Statistics128
    • Statistics and probability128
    • MicroRNA sequencing125
    • RNA sequencing125
    • RNA-Seq125
    • RNA-Seq analysis125
    • Small RNA sequencing125
    • Small RNA-Seq125
    • Small-Seq125
    • Transcriptome profiling125
    • WTSS125
    • Whole transcriptome shotgun sequencing125
    • miRNA-seq125
    • Algorithms121
    • Computer programming121
    • Data structures121
    • Programming languages121
    • Software development121
    • Software engineering121
    • Chromosome walking106
    • Clone verification106
    • DNA-Seq106
    • DNase-Seq106
    • High throughput sequencing106
    • High-throughput sequencing106
    • NGS106
    • NGS data analysis106
    • Next gen sequencing106
    • Next generation sequencing106
    • Panels106
    • Primer walking106
    • Sanger sequencing106
    • Sequencing106
    • Targeted next-generation sequencing panels106
    • Active learning88
    • Ensembl learning88
    • Kernel methods88
    • Knowledge representation88
    • Machine learning88
    • Neural networks88
    • Recommender system88
    • Reinforcement learning88
    • Supervised learning88
    • Unsupervised learning88
    • Bioinformatics85
    • Metagenomics80
    • Shotgun metagenomics80
    • Python75
    • Python program75
    • Python script75
    • py75
    • Biodiversity69
    • Bottom-up proteomics62
    • Discovery proteomics62
    • MS-based targeted proteomics62
    • MS-based untargeted proteomics62
    • Metaproteomics62
    • Peptide identification62
    • Protein and peptide identification62
    • Proteomics62
    • Quantitative proteomics62
    • Targeted proteomics62
    • Top-down proteomics62
    • Single-cell genomics60
    • Single-cell sequencing60
    • Data rendering59
    • Data visualisation59
    • Antimicrobial stewardship56
    • Medical microbiology56
    • Microbial genetics56
    • Microbial physiology56
    • Microbial surveillance56
    • Show N_FILTERS more
    • Tool
    • Galaxy31
    • QUAST12
    • BUSCO9
    • Bandage8
    • FastQC8
    • Flye6
    • NanoPlot6
    • Unicycler5
    • fastp5
    • Merqury4
    • Minimap24
    • MultiQC4
    • SAMtools4
    • BEDTools3
    • BWA3
    • BamTools3
    • Bwa-mem23
    • GenomeScope 2.03
    • JBrowse3
    • gfastats3
    • seqtk3
    • BCFtools2
    • Cutadapt2
    • Medaka2
    • OMArk2
    • SPAdes2
    • STAR2
    • VelvetOptimiser2
    • dRep2
    • gffread2
    • kraken22
    • pilon2
    • snippy2
    • ABRicate1
    • BLAST1
    • Bakta1
    • Bowtie 21
    • COMBAT-TB Workbench1
    • CONCOCT1
    • CheckM1
    • Circos1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • CoverM1
    • Diamond1
    • Falco1
    • FastTree1
    • Filtlong1
    • FreeBayes1
    • Galactic Circos1
    • Helixer1
    • Jvarkit1
    • KrakenTools1
    • MEGAHIT1
    • MLST1
    • MaxBin1
    • MetaBAT 21
    • NGSUtils1
    • Newick Utilities1
    • Polypolish1
    • QualiMap1
    • Racon1
    • SALSA1
    • SRA Software Toolkit1
    • Smudgeplots1
    • Vcflib1
    • compute_sequence_length1
    • dastool1
    • ggplot21
    • metaspades1
    • purge_dups1
    • shovill1
    • taxonomy_krona_chart1
    • Show N_FILTERS more
    • Content provider
    • GTN34
    • European Bioinformatics Institute (EBI)2
    • Show N_FILTERS more
    • Keyword
    • Assembly25
    • biodiversity13
    • microgalaxy11
    • assembly9
    • prokaryote6
    • jbrowse15
    • Microbiome4
    • nanopore4
    • Variant Analysis3
    • metagenomics3
    • pacbio3
    • plants3
    • Braker32
    • Genome Annotation2
    • VGP2
    • binning2
    • covid192
    • eukaryota2
    • eukaryote2
    • gmod2
    • illumina2
    • Heatmap1
    • Helixer1
    • Microbial DNA1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • QC1
    • amr1
    • animals1
    • cyoa1
    • denovo1
    • genome1
    • genomics1
    • one-health1
    • polishing1
    • quality control1
    • tuberculosis1
    • Show N_FILTERS more
    • Competency level
    • Beginner23
    • Intermediate11
    • Not specified2
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International34
    • License Not Specified2
    • Show N_FILTERS more
    • Target audience
    • Students34
    • Clinicians1
    • PhD students1
    • Show N_FILTERS more
    • Author
    • Delphine Lariviere9
    • Simon Gladman9
    • Anton Nekrutenko7
    • Anthony Bretaudeau5
    • Bérénice Batut5
    • Alexandre Cormier4
    • Anna Syme4
    • Cristóbal Gallardo4
    • Laura Leroi4
    • Stéphanie Robin4
    • Alex Ostrovsky3
    • Erwan Corre3
    • Paul Zierep3
    • Bazante Sanders2
    • Brandon Pickett2
    • Helena Rasche2
    • Linelle Abueg2
    • Romane LIBOUBAN2
    • Solenne Correard2
    • Vini Salazar2
    • Christophe Klopp1
    • Engy Nasr1
    • Fabian Recktenwald1
    • Fotis E. Psomopoulos1
    • Giulio Formenti1
    • Grace Hall1
    • Marcella Sozzoni1
    • Nikos Pechlivanis1
    • Peter van Heusden1
    • Polina Polunina1
    • Saskia Hiltemann1
    • Thoba Lose1
    • Tom Brown1
    • Torsten Seemann1
    • Tristan Reynolds1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann32
    • Bérénice Batut27
    • Helena Rasche27
    • Björn Grüning24
    • Cristóbal Gallardo18
    • Anthony Bretaudeau13
    • Niall Beard9
    • Nicola Soranzo9
    • Deepti Varshney8
    • Delphine Lariviere7
    • Anton Nekrutenko6
    • Teresa Müller6
    • William Durand6
    • Anna Syme5
    • Paul Zierep5
    • Tristan Reynolds5
    • Alexandre Cormier4
    • Maria Doyle4
    • Simon Gladman4
    • Wolfgang Maier4
    • Gildas Le Corguillé3
    • Linelle Abueg3
    • Natalie Whitaker-Allen3
    • Solenne Correard3
    • Bazante Sanders2
    • Erwan Corre2
    • Laura Leroi2
    • Miaomiao Zhou2
    • Mélanie Petera2
    • Nate Coraor2
    • Peter van Heusden2
    • Saim Momin2
    • Stéphanie Robin2
    • Alex Ostrovsky1
    • Anne Fouilloux1
    • Armin Dadras1
    • Engy Nasr1
    • Enis Afgan1
    • Giuseppe Defazio1
    • Hans-Rudolf Hotz1
    • Jennifer Hillman-Jackson1
    • Marius van den Beek1
    • Matúš Kalaš1
    • Nikos Pechlivanis1
    • Polina Polunina1
    • Romane LIBOUBAN1
    • Tom Brown1
    • Verena Moosmann1
    • Vijay1
    • Yvan Le Bras1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning27
    • slides8
    • Recorded webinar1
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows29
    • Associated Training Datasets28
    • Show N_FILTERS more
    • Node
    • EMBL-EBI2
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Assembly

36 materials found
  • slides

    Deeper look into Genome Assembly algorithms

    •• Intermediate
    Sequence assembly Assembly
  • slides

    An introduction to get started in genome assembly and annotation

    • Beginner
    Sequence assembly Assembly
  • slides

    Unicycler Assembly

    • Beginner
    Sequence assembly Assembly prokaryote
  • slides

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    • Beginner
    Sequence assembly Assembly covid19
  • slides

    An Introduction to Genome Assembly

    • Beginner
    Sequence assembly Assembly
  • slides

    De Bruijn Graph Assembly

    • Beginner
    Sequence assembly Assembly
  • 1
  • 2
  • 3
  • 4
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.