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• • Scientific topic
  • Algorithms49
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  • Exomes43
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  • Biodiversity41
  • Comparative transcriptomics37
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  • Bayesian methods35
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  • Biological sequences33
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  • Computational chemistry9
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  • MS-based untargeted metabolomics9
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  • Metabolites9
  • Metabolome9
  • Metabolomics9
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  • NMR-based metabolomics9
  • Epigenomics8
  • DNA metabarcoding7
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  • De novo genome sequencing6
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• • Tool
  • Galaxy318
  • FastQC27
  • SAMtools21
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  • BWA19
  • BEDTools14
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  • Falco13
  • JBrowse12
  • BLAST11
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  • ggplot211
  • scikit-learn11
  • BUSCO10
  • Cutadapt10
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  • Trimmomatic9
  • taxonomy_krona_chart9
  • FreeBayes8
  • GEMINI8
  • STAR8
  • BCFtools7
  • Bandage7
  • NanoPlot7
  • msConvert7
  • BamTools6
  • FASTX-Toolkit6
  • Flye6
  • HISAT26
  • MAFFT6
  • MaxQuant6
  • Open Babel6
  • Biopython5
  • Minimap25
  • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
  • RStudio5
  • SRA Software Toolkit5
  • Workflow4Metabolomics5
  • anndata5
  • annotatemyids5
  • compute_sequence_length5
  • gffread5
  • kraken25
  • seqtk5
  • Bowtie 24
  • Bwa-mem24
  • Diamond4
  • GOseq4
  • Galactic Circos4
  • KrakenTools4
  • MSstats4
  • MetaPhlAn4
  • Newick Utilities4
  • RSeQC4
  • The Protein Data Bank (PDB)4
  • Trim Galore4
  • UniProt4
  • Unicycler4
  • bx-python4
  • mothur4
  • xcms4
  • Bakta3
  • Bracken3
  • Cardinal3
  • CellProfiler3
  • DESeq23
  • DropletUtils3
  • FastTree3
  • GenomeScope 2.03
  • InterProScan (EBI)3
  • MACS3
  • Merqury3
  • OMArk3
  • QualiMap3
  • RDKit3
  • Salmon3
  • Stacks3
  • StringTie3
  • Vcflib3
  • dRep3
  • gfastats3
  • gffcompare3
  • iqtree3
  • lofreq3
  • snippy3
  • snpEff3
  • Apollo2
  • Bio3D2
  • COMBAT-TB Workbench2
  • ChEMBL2
  • CheckM2
  • Circos2
  • Clustal 1.8 (Clustal W, Clustal X)2
  • FeatureCounts2
  • GOEnrichment2
  • GraPhlAn2
  • Gromacs2
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• • Content provider
  • GTN433
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• • Keyword
  • jupyter-notebook52
  • Foundations of Data Science48
  • biodiversity46
  • microgalaxy41
  • Proteomics35
  • Single Cell34
  • Statistics and machine learning34
  • Ecology30
  • Microbiome27
  • Genome Annotation24
  • Transcriptomics24
  • FAIR Data, Workflows, and Research23
  • Using Galaxy and Managing your Data23
  • Imaging18
  • Assembly17
  • Variant Analysis17
  • fair16
  • jbrowse116
  • gmod15
  • interactive-tools15
  • work-in-progress15
  • Introduction to Galaxy Analyses14
  • Climate13
  • paper-replication12
  • prokaryote12
  • MIGHTS11
  • earth-system11
  • Image segmentation10
  • Sequence analysis10
  • assembly10
  • data stewardship10
  • eukaryote10
  • plants10
  • DDA9
  • Metabolomics9
  • ai-ml9
  • covid199
  • cyoa9
  • elixir9
  • label-free9
  • metagenomics9
  • one-health9
  • 10x8
  • Computational chemistry8
  • Epigenetics8
  • ocean8
  • workflows8
  • EBV dataset7
  • EBV workflow7
  • collections7
  • dmp7
  • español7
  • metabarcoding7
  • nanopore7
  • Overlay6
  • data management6
  • deutsch6
  • ecology6
  • illumina6
  • italiano6
  • transcriptomics6
  • 16S5
  • Large Language Model5
  • R5
  • SQL5
  • deconvolution5
  • label-TMT115
  • mouse5
  • rmarkdown-notebook5
  • ro-crate5
  • virology5
  • Bioimaging4
  • Conversion4
  • DIA4
  • Data management4
  • Digital Humanities4
  • Evolution4
  • FAIR4
  • Multi-channel image4
  • Object feature extraction4
  • QC4
  • Visualisation4
  • bacteria4
  • diversity4
  • genetic composition EBV class4
  • pangeo4
  • single-cell4
  • taxonomic profiling4
  • ChIP-seq3
  • Deep learning3
  • Image annotation3
  • RAD-seq3
  • Synthetic Biology3
  • amr3
  • apollo23
  • bash3
  • bulk3
  • data import3
  • deep-learning3
  • epigenetics3
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• • Competency level
  • Beginner315
  • Intermediate106
  • Advanced12
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• • Licence
  • Creative Commons Attribution 4.0 International433
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• • Target audience
  • Students
  • Clinicians119
  • PhD students118
  • Galaxy Administrators56
  • Instructors46
  • health professionals9
  • PhD candidates9
  • Researcher in life sciences9
  • Scientists9
  • Bioinformaticians6
  • Health Care Professionals6
  • Anyone wishing to use bioinformatics resources to find basic information about a virus.4
  • Life Science Researchers4
  • Patient Advocates 4
  • Researchers4
  • healthcare professionals4
  • rare disease patients representatives3
  • Bench biologists3
  • Biologists3
  • Biologists with little or no prior computational experience3
  • Biomedical researchers3
  • Clinical Scientists3
  • biologists3
  • Bioinformaticians, Biologists with little or no prior computational experience.2
  • General Physicians2
  • Laboratory technicians2
  • Veterinarians2
  • biocurators2
  • medical students2
  • Analysts1
  • Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
  • Anyone wishing to interpret graphs showing the progression of COVID-19.1
  • Biologists and bioinformaticians1
  • Biomedical Researchers1
  • Biotechnology Companies1
  • Data Managers1
  • Data Scientists1
  • Fellows and Residents1
  • Graduate Students1
  • Life science researchers who are new to high performance computing1
  • Life scientists with no or little knowledge of the ISMARA tool.1
  • Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.1
  • Neurological1
  • Paediatricians1
  • PhD Students1
  • Postgraduate students1
  • Primary care doctors1
  • Research Scientists1
  • Research Software Engineers1
  • Students, postdocs, and researchers, from any scientific environment (academia, facilities, companies, etc.) interested in viral data, as well as anyone looking for virion and viral genome images for use in teaching or publications.1
  • beginner1
  • beginner bioinformaticians1
  • geneticists1
  • physisians1
  • postdocs1
  • scientists1
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• • Author
  • Bérénice Batut51
  • Helena Rasche48
  • Anton Nekrutenko25
  • Yvan Le Bras23
  • Saskia Hiltemann22
  • Subina Mehta22
  • The Carpentries22
  • Bazante Sanders18
  • Björn Grüning17
  • Katarzyna Kamieniecka17
  • Krzysztof Poterlowicz17
  • Anthony Bretaudeau15
  • Anne Fouilloux14
  • Marie Josse14
  • Donny Vrins13
  • Wendi Bacon13
  • Wolfgang Maier13
  • James Johnson12
  • Julia Jakiela12
  • Katherine Do12
  • Mehmet Tekman12
  • Khaled Jum'ah11
  • Maria Doyle11
  • Nicola Soranzo11
  • Simon Bray11
  • Anup Kumar10
  • Delphine Lariviere10
  • Fotis E. Psomopoulos10
  • Melanie Föll10
  • Pavankumar Videm10
  • Pratik Jagtap10
  • Cristóbal Gallardo9
  • Avans Hogeschool8
  • Diana Chiang Jurado8
  • Timothy J. Griffin8
  • Anika Erxleben7
  • Daniel Blankenberg7
  • Dave Clements7
  • Florian Christoph Sigloch7
  • Laura Cooper7
  • Leonid Kostrykin7
  • Matthias Fahrner7
  • Paul Zierep7
  • Praveen Kumar7
  • Robert Andrews7
  • Simon Gladman7
  • Andrew Mason6
  • Anna Syme6
  • Branka Franicevic6
  • Coline Royaux6
  • Emma Leith6
  • Philippe Rocca-Serra6
  • Sara Morsy6
  • Valentin Loux6
  • Xenia Perez Sitja6
  • Beatriz Serrano-Solano5
  • Christopher Barnett5
  • Dechen Bhuming5
  • Erwan Corre5
  • Joachim Wolff5
  • Kellie Snow5
  • Korneel Hens5
  • Marius van den Beek5
  • Munazah Andrabi5
  • Nadia Goué5
  • Nick Juty5
  • Raphael Mourad5
  • Ray Sajulga5
  • Riccardo Massei5
  • Saskia Lawson-Tovey5
  • Stéphanie Robin5
  • Alex Ostrovsky4
  • Alexandre Cormier4
  • Alireza Khanteymoori4
  • Amirhossein Naghsh Nilchi4
  • Anne Pajon4
  • Clemens Blank4
  • Daniela Schneider4
  • Gildas Le Corguillé4
  • Helge Hecht4
  • Hélène Chiapello4
  • Kaivan Kamali4
  • Laura Leroi4
  • Mallory Freeberg4
  • Marisa Loach4
  • Morgan Howells4
  • Romane LIBOUBAN4
  • Simone Leo4
  • Tristan Reynolds4
  • Vivek Bhardwaj4
  • Belinda Phipson3
  • Fabio Cumbo3
  • Fidel Ramirez3
  • Florian Heyl3
  • Guillaume Gricourt3
  • Ioana Popescu3
  • Jean-Loup Faulon3
  • Jeremy Goecks3
  • Joan Hérisson3
  • Junhao Qiu3
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• • Contributor
  • Saskia Hiltemann378
  • Helena Rasche308
  • Björn Grüning273
  • Bérénice Batut149
  • Nicola Soranzo71
  • Anthony Bretaudeau65
  • Martin Čech49
  • Wendi Bacon49
  • Niall Beard48
  • Teresa Müller43
  • Armin Dadras42
  • Beatriz Serrano-Solano41
  • Cristóbal Gallardo41
  • Gildas Le Corguillé37
  • Pavankumar Videm37
  • Mehmet Tekman35
  • Yvan Le Bras35
  • Melanie Föll31
  • William Durand31
  • Wolfgang Maier31
  • Marie Josse28
  • Marius van den Beek28
  • Anup Kumar27
  • Donny Vrins23
  • Subina Mehta23
  • Maria Doyle22
  • Peter van Heusden21
  • Simon Bray21
  • Leonid Kostrykin20
  • Nate Coraor20
  • Bazante Sanders18
  • Tristan Reynolds18
  • Deepti Varshney17
  • Julia Jakiela17
  • Khaled Jum'ah17
  • Anton Nekrutenko16
  • Lucille Delisle15
  • Paul Zierep15
  • Anne Fouilloux13
  • Pratik Jagtap13
  • Daniela Schneider12
  • Delphine Lariviere12
  • Diana Chiang Jurado12
  • Timothy J. Griffin12
  • Mélanie Petera11
  • Pablo Moreno11
  • David López10
  • Matthias Bernt10
  • Katarzyna Kamieniecka9
  • Marisa Loach9
  • Simon Gladman9
  • Stéphanie Robin9
  • Amirhossein Naghsh Nilchi8
  • Anna Syme8
  • Verena Moosmann8
  • Katherine Do7
  • Mallory Freeberg7
  • Christopher Barnett6
  • Clemens Blank6
  • Florian Christoph Sigloch6
  • Hans-Rudolf Hotz6
  • Morgan Howells6
  • Alireza Khanteymoori5
  • Bert Droesbeke5
  • Clea Siguret5
  • Dave Clements5
  • Ekaterina Polkh5
  • Florian Heyl5
  • Kaivan Kamali5
  • Linelle Abueg5
  • Riccardo Massei5
  • Wandrille Duchemin5
  • olisand5
  • Alexandre Cormier4
  • Coline Royaux4
  • Fabio Cumbo4
  • Fotis E. Psomopoulos4
  • Natalie Whitaker-Allen4
  • Eli Chadwick3
  • Engy Nasr3
  • Enis Afgan3
  • Jasper Ouwerkerk3
  • Krzysztof Poterlowicz3
  • Maria Christina Maniou3
  • Mateusz Kuzak3
  • Miaomiao Zhou3
  • Paulo Cilas Morais Lyra Junior3
  • Sofoklis Keisaris3
  • Timon Schlegel3
  • Ahmed Hamid Awan2
  • Alex Ostrovsky2
  • Anika Erxleben2
  • Arthur Barreau2
  • Camila Goclowski2
  • Carlos Chee Mendonça2
  • Christine Oger2
  • Christoph Stritt2
  • Daniel Blankenberg2
  • Fidel Ramirez2
  • Florence Combes2
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• • Resource type
  • e-learning
  • slides93
  • Training materials18
  • Lecture16
  • Presentation16
  • hands-on tutorial14
  • lessons8
  • course materials2
  • Course materials1
  • E-Learning1
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  • Tutorial1
  • online course1
  • tutorial1
  • tutorials1
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• • Related resource
  • Associated Training Datasets283
  • Associated Workflows268
  • Jupyter Notebook (with Solutions)48
  • Jupyter Notebook (without Solutions)48
  • Quarto/RMarkdown Notebook5
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• • Collection
  • ELIXIR Biodiversity Community5
  • 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
  • ELIXIR hCNV community - collection of courses and materials.1
  • ELIXIR Federated Human Data Community1
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