Training materials
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ELIXIR TeSS
e-learning
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• BeginnerSequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology Sequence analysis bacteria illumina microgalaxy -
ELIXIR TeSS
e-learning
Single-cell ATAC-seq standard processing with SnapATAC2
•• Intermediate10x Single Cell epigenetics single-cell -
ELIXIR TeSS
e-learning
Genome-wide alternative splicing analysis
••• AdvancedTranscriptomics Transcriptomics alternative splicing isoform switching -
ELIXIR TeSS
e-learning
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities
• BeginnerEcology Biodiversity EML Ecology FAIR biodiversity data paper ecology metadata -
ELIXIR TeSS
e-learning
Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS
• BeginnerEcology Biodiversity EML Ecology FAIR biodiversity data paper metadata -
ELIXIR TeSS
e-learning
Converting NCBI Data to the AnnData Format
• BeginnerSingle Cell data import data management sc_formats -
ELIXIR TeSS
e-learning
Converting between common single cell data formats
• BeginnerSingle Cell data import data management sc_formats -
ELIXIR TeSS
e-learning
Identification of the micro-organisms in a beer using Nanopore sequencing
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome beer citizen science metagenomics microgalaxy nanopore -
ELIXIR TeSS
e-learning
Taxonomic Profiling and Visualization of Metagenomic Data
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome metagenomics microgalaxy taxonomic profiling -
ELIXIR TeSS
e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• BeginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …