Training materials
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e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• BeginnerSequence assembly Genomics Biodiversity Mitochondria Assembly biodiversity -
e-learning
Genome annotation with Helixer
•• IntermediateGenomics Biodiversity Zoology Plant biology Genome Annotation biodiversity eukaryota helixer jbrowse1 -
e-learning
Marine Omics identifying biosynthetic gene clusters
• BeginnerEcology Biodiversity Ecology biodiversity earth-system marine omics ocean -
e-learning
Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons
••• AdvancedGenetic variation Variant Analysis -
e-learning
Calculating α and β diversity from microbiome taxonomic data
• BeginnerMetagenomics Microbial ecology Microbiome diversity metagenomics -
e-learning
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• BeginnerSequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology Sequence analysis bacteria illumina microgalaxy -
e-learning
Single-cell ATAC-seq standard processing with SnapATAC2
•• Intermediate10x Single Cell epigenetics single-cell -
e-learning
Genome-wide alternative splicing analysis
••• AdvancedTranscriptomics Transcriptomics alternative splicing isoform switching -
e-learning
From NDVI data with OpenEO to time series visualisation with Holoviews
• BeginnerEcology Biodiversity Ecology NDVI copernicus earth-system holoviews land degradation -
e-learning
QGIS Web Feature Services
• BeginnerEcology Biodiversity Ecology GIS Geographical Information System OGC WFS biodiversity earth-system maps …