Workflows
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ELIXIR TeSS
Carpentree test case
Manual example created as proof of concept for our Carpentree project, created at the #CollabW19 workshop in Loughborough on 3 April 2019
The lessons referred to are:
- Programming with Python (PP): http://swcarpentry.github.io/python-novice-inflammation/index.html
- Plotting and... -
ELIXIR TeSS
ChIP-seq workflow
Basic workflow for ChIP-seq analysis
Topic: ChIP-seq
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ELIXIR TeSS
ChIP-seq workflow (with intermediate data)
Basic workflow for ChIP-seq analysis
Topic: ChIP-seq
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ELIXIR TeSS
ChIP-seq workflow in Bioconductor
Basic workflow for ChIP-seq analysis using Bioconductor from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5389943/
Topic: ChIP-seq
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ELIXIR TeSS
Data Management in Bioinformatics
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ELIXIR TeSS
EBI metagenomics pipeline 2.0
EBI metagenomics pipeline 2.0
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ELIXIR TeSS
ELIXIR Structural Bioinformatics 2: Exploring protein domains and functional sites
This training workflow introduces how to search (using query protein sequences or structures) for protein domains, conservation and protein family information, surface and topological interfaces, and possible ligand binding sites.
It is designed to lead you through the process of finding...
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ELIXIR TeSS
ELIXIR Structural Bioinformatics 3: Predicting the effect of mutation on protein function
This workflow builds on the previous training workflows in this series on building protein models and identifying functional domains or ligand binding sites - and introduces methods to predict how mutations can impact on protein function.
It is designed to lead you through the process of...
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ELIXIR TeSS
EMBER: A practical guide to Bioinformatics
This practical introduces a range of Web-based databases and tools, allowing their relative strengths and weaknesses to be compared. The practical comprises several modules, each broken down into simple steps.
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ELIXIR TeSS
Fork of Fork of Peroxisomal Proteins Detection
Workflow to identify putative peroxisomal proteins from the FASTA sequence