SIB Swiss Institute of Bioinformatics

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Showing 30 materials out of 113

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Cancer Variant Analysis

•• intermediate
Introduction to Sequencing-based Spatial Transcriptomics Data Analysis

• beginner
e-learning

Data Repositories for Bioinformatics

• beginner
Data management Online Repository Data reuse Data mining FAIR Data
Computer Software, workflow

How to use V-pipe (SARS-CoV-2 data)

• beginner
Virology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling
Training materials

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

• beginner
Bioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material
Multiomics Data Analysis and Integration

• beginner
data integration multiomics data analysis
e-learning

BLAST and multiple sequence alignment (MSA) programs

• beginner
Sequence analysis Blast Multiple sequence alignment
BLAST and multiple sequence alignment (MSA) programs

• beginner
Blast E learning Multiple sequence alignment
Diving into Deep Learning - Theory and Applications with PyTorch

•• intermediate
Using ASAP for Single-Cell Analysis

• beginner
genes and genomes biomarkers experimental biology functional genomics next generation sequencing population genomics single-cell biology training transcriptomics bart deplancke group
First Steps with R in Life Sciences

• beginner
training,biostatistics,data visualisation,programming,mark ibberson group training,biostatistics,data visualisation,programming,torsten schwede & thierry sengstag group
e-learning

UNIX Fundamentals

• beginner
Computer science Problem based learning Programming Unix
Tutorial, Slideshow, e-learning

High Performance Computing (HPC) in Life Sciences

• beginner
Computer science Bioinformatics Biology High performance computing high-performance computing
e-learning

neXtProt : Exploring human proteins

• beginner
Proteins Proteomics Human biology
e-learning

ISMARA: A tool to infer genome-wide regulatory interactions

• beginner
Systems biology Gene regulation Transcription factors and regulatory sites Computational modelling Gene regulation
e-learning

Cellosaurus : A resource on cell lines

• beginner
Biosciences Experimental design and studies basic research Reproducibility cell line
Vital-IT Infrastructure Usage
e-learning

Explore and Visualize Your Data with Python

•• intermediate
Data visualisation Bioinformatics Python Data analysis Data visualisation
NGS - Genome Variant Analysis

• beginner
medicine and health,next generation sequencing,training,agriculture,environmental science,medicine and health medicine and health,next generation sequencing,training,agriculture,environmental science,rémy bruggmann group,medicine and health
Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace
R Basics Quiz

• beginner
Spatial Omics Data Analysis

•• intermediate
ViralZone

Phylogenetics of animal viral pathogens

• beginner
Animal pathogens E learning Phylogenetics
First Steps with SQL for Data Science

• beginner
SQL programming
Video, E-learning

FAIR principles in practice for health data

• beginner
Computer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework …
ISMARA: A tool to infer genome-wide regulatory interactions
Querying SIB resources with SPARQL
Introduction to Bulk RNA-Seq: From Quality Control to Pathway Analysis

• beginner
functional genomics genes and genomes next generation sequencing transcriptomics training torsten schwede & thierry sengstag group
SARS-CoV-2 : Studying a new virus
Using Large Language Models for Biodata Exploration: From Theory to Practice

• beginner
machine learning mark ibberson group training

Showing 30 events out of 57 (also found 622 past events)

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Cancer Variant Analysis

Introduction to Sequencing-based Spatial Transcriptomics Data Analysis

Data Repositories for Bioinformatics

How to use V-pipe (SARS-CoV-2 data)

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

Multiomics Data Analysis and Integration

BLAST and multiple sequence alignment (MSA) programs

BLAST and multiple sequence alignment (MSA) programs

Diving into Deep Learning - Theory and Applications with PyTorch

Using ASAP for Single-Cell Analysis

First Steps with R in Life Sciences

UNIX Fundamentals

High Performance Computing (HPC) in Life Sciences

neXtProt : Exploring human proteins

ISMARA: A tool to infer genome-wide regulatory interactions

Cellosaurus : A resource on cell lines

Vital-IT Infrastructure Usage

Explore and Visualize Your Data with Python

NGS - Genome Variant Analysis

Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace

R Basics Quiz

Spatial Omics Data Analysis

Phylogenetics of animal viral pathogens

First Steps with SQL for Data Science

FAIR principles in practice for health data

ISMARA: A tool to infer genome-wide regulatory interactions

Querying SIB resources with SPARQL

Introduction to Bulk RNA-Seq: From Quality Control to Pathway Analysis

SARS-CoV-2 : Studying a new virus

Using Large Language Models for Biodata Exploration: From Theory to Practice

Interactive Visualisation with Python

Introduction to Sequencing Data Analysis

Interactive Visualization with Python

Data Analysis and Representation in Python

Nanopore Direct RNA Sequencing Data Analysis

First Steps with SQL for Data Science

ELIXIR-GOBLET Train-the-Trainer

Federated Learning in Bioinformatics

Introduction to Metagenomics Data Analysis of Microbial Communities

Introduction to High-performance Computing (sciCORE Cluster)

How to make best use of Cellosaurus

First Steps in Parallelization with OpenMP

Biodiversity Data Unlocked: Publishing in GBIF with IPT

Building Agentic AI Applications for Biodata Exploration

Gene Expression made Useful Easily: Tools and Database of Bgee

Introduction to Machine Learning with Python

Introduction to Spatial Transcriptomics Data Analysis

Missing Data and Imputation Methods

Docker and Singularity for Reproducible Research: Getting Started with Containers

NGS - Genome Variant Analysis

Single-Cell Transcriptomics with R

Biodiversity Bioinformatics Summer School

AlphaFold for protein structure prediction

AlphaFold for protein structure prediction

Using the Gene Ontology Annotations in UniProt

Best Practices in Programming

Make Your Research FAIRer with Quarto, GitHub and Zenodo

Introduction to Sequencing-based Spatial Transcriptomics Data Analysis

Advanced Programming with R

Advanced Programming with R