Switzerland
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UNIX Fundamentals
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ViralZone
Phylogenetics of animal viral pathogens
• beginnerAnimal pathogens E learning Phylogenetics -
BLAST and multiple sequence alignment (MSA) programs
• beginnerBlast E learning Multiple sequence alignment -
Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace
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Vital-IT Infrastructure Usage
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R Basics Quiz
• beginner -
e-learning
UNIX Fundamentals
• beginnerComputer science Problem based learning Programming Unix -
High Performance Computing in Life Sciences
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Tutorial, Slideshow, e-learning
High Performance Computing (HPC) in Life Sciences
• beginnerComputer science Bioinformatics Biology High performance computing high-performance computing -
e-learning
Phylogenetics of animal pathogens: basic principles and applications
• beginnerPhylogenetics Veterinary medicine Animal pathogens Phylogenetics -
e-learning
BLAST and multiple sequence alignment (MSA) programs
• beginnerSequence analysis Blast Multiple sequence alignment -
Querying SIB resources with SPARQL
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Computer Software, workflow
How to use V-pipe (SARS-CoV-2 data)
• beginnerVirology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling -
IFB Shiny training
•• intermediateR-programming Reproducible Science -
Training materials
Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide
• beginnerBioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material -
Course design: Considerations for trainers – a Professional Guide
Curriculum development, course design, learning outcomes, Bloom's Taxonomy, assessment, course evaluation, training trainers, training material
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BioMedIT: Information Security Awareness Training
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e-learning
neXtProt : Exploring human proteins
• beginnerProteins Proteomics Human biology -
Cybersecurity Quiz for SIB employees only (internal use)
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Explore and visualize your data with Python
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SARS-CoV-2 : Studying a new virus
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Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data … -
Cellosaurus : A resource on cell lines
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Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data … -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF … -
Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
• beginnerData visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval … -
Video, Training materials, E-learning
Semantic Standards
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Data handling Standardisation and normalisation Clinical data Data semantics FAIR … -
Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data … -
Video, Training materials, E-learning
Expanding the SPHN RDF Schema
• beginnerOntology and terminology Medical informatics FAIR data Data management Computer science Data editing Ontology visualisation Visualisation Data handling Clinical data … -
Getting Started With BioMedIT
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Workshops and courses
Introduction to High-performance Computing (sciCORE Cluster)
14 September 2026 @ 09:00 - 17:00
Online
services and resources high-performance computing -
Workshops and courses
Diving into Deep Learning - Theory and Applications with PyTorch
3 - 4 December 2026
Online
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Workshops and courses
Ligand-protein docking, and computer-aided drug design
12 - 13 October 2026
Bern, Switzerland
Face-to-face
proteins and proteomes structural biology homology modelling modelling and simulation protein engineering vincent zoete group olivier michielin & vincent zoete group protein interactions -
Workshops and courses
ELIXIR-GOBLET Train-the-Trainer
23 - 26 November 2026
Online
training community outreach ELIXIR-GOBLET Train-the-Trainer Train the Trainer #ELIXIR-GOBLET-Train-the-Trainer -
Workshops and courses
Introduction to Spatial Transcriptomics Data Analysis
3 - 5 June 2026
Zürich, Switzerland
Face-to-face
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Workshops and courses
NGS - Genome Variant Analysis
11 - 12 June 2026
Basel, Switzerland
Face-to-face
medicine and health next generation sequencing training agriculture environmental science rémy bruggmann group -
Workshops and courses
Nextflow in Action: Build Smarter, Faster, Reproducible Pipelines
18 - 19 November 2026
Online
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Workshops and courses
AlphaFold for protein structure prediction
23 - 24 June 2026
Basel, Switzerland
Face-to-face
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Workshops and courses
Genome bioinformatics: from short- to long-read sequencing | EMBL-EBI Training
16 - 20 November 2026
Face-to-face
Sequence read processing Next generation sequencing Long read sequencing -
Workshops and courses
Advanced Programming with R
24 - 26 August 2026
Lausanne, Switzerland
Face-to-face
biostatistics programming reproducibility training -
Workshops and courses
Gene Expression made Useful Easily: Tools and Database of Bgee
29 May 2026 @ 09:00 - 17:00
Online
data management data visualisation transcriptomics training marc robinson-rechavi group -
Workshops and courses
Introduction to High-performance Computing (sciCORE Cluster)
7 December 2026 @ 09:00 - 17:00
Online
services and resources high-performance computing -
Workshops and courses
Computer-Aided Drug Design
26 - 28 October 2026
Bern, Switzerland
Face-to-face
proteins and proteomes structural biology homology modelling modelling and simulation protein engineering vincent zoete group olivier michielin & vincent zoete group protein interactions -
Workshops and courses
EBAII Assemblage & Annotation 2026
8 - 12 June 2026
Face-to-face
Genome assembly Genome annotation Genome assembly Genome annotation -
Workshops and courses
Ligand-protein docking, and computer-aided drug design
12 - 13 October 2026
Bern, Switzerland
Face-to-face
proteins and proteomes structural biology homology modelling modelling and simulation protein engineering vincent zoete group olivier michielin & vincent zoete group protein interactions -
Workshops and courses
Ensuring More Accurate, Generalisable, and Interpretable Machine Learning Models for Bioinformatics
17 November 2026 @ 09:00 - 17:00
Online
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Workshops and courses
AlphaFold for protein structure prediction
23 - 24 June 2026
Basel, Switzerland
Face-to-face
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Workshops and courses
Version Control with Git
29 - 30 October 2026
Online
programming reproducibility data management training -
Workshops and courses
First Steps with Python in Life Sciences
16 - 18 September 2026
Basel, Switzerland
Face-to-face
data management data visualisation programming reproducibility training torsten schwede & thierry sengstag group mark ibberson group -
Workshops and courses
Biodiversity Bioinformatics Summer School | SIB Swiss Institute of Bioinformatics
21 - 26 June 2026
Face-to-face
Comparative genomics Population genetics Phylogenetics Comparative genomics Population genetics Phylogenetics / Phylogenomics Pangenomes -
Workshops and courses
Introduction to Machine Learning with Python
1 - 22 June 2026
Online
data mining machine learning training torsten schwede & thierry sengstag group mark ibberson group -
Workshops and courses
Building and Maintaining Scientific Resources
25 November 2026 @ 09:00 - 17:00
Online
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Workshops and courses
Using the Gene Ontology Annotations in UniProt
15 June 2026 @ 09:00 - 17:00
Online
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Workshops and courses
Biology-informed Integration and Visualisation of Multiomics Data
23 - 25 September 2026
Bern, Switzerland
Face-to-face
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Workshops and courses
Introduction to Bulk RNA-Seq: From Quality Control to Pathway Analysis
8 - 9 October 2026
Basel, Switzerland
Face-to-face
functional genomics genes and genomes next generation sequencing transcriptomics training torsten schwede & thierry sengstag group -
Workshops and courses
Advanced Statistics: Statistical Modelling
7 - 10 September 2026
Lausanne, Switzerland
Face-to-face
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Workshops and courses
First Steps with R in Life Sciences
5 - 6 October 2026
Geneva, Switzerland
Face-to-face
training biostatistics data visualisation programming torsten schwede & thierry sengstag group -
Workshops and courses
Advanced Programming with R
2 - 4 September 2026
Lausanne, Switzerland
Face-to-face
biostatistics programming reproducibility training -
Workshops and courses
Biology-informed Multiomics Data Integration and Visualization
23 - 25 September 2026
Bern, Switzerland
Face-to-face
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Workshops and courses
Introduction to Sequencing-based Spatial Transcriptomics Data Analysis
8 - 10 July 2026
Zürich, Switzerland
Face-to-face
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SIB Swiss Institute of Bioinformatics
The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of public utility and established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international...
113 training materials57 events (622 past events)SIB Swiss Institute of Bioinformatics http://www.sib.swiss/training/training-group https://tess.elixir-europe.org/content_providers/swiss-institute-of-bioinformatics The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of public utility and established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international research community. /system/content_providers/images/000/000/011/original/sib_logo_medium.jpg?1662299701 -
Glittr.org
Glittr (https://glittr.org) is a web application that helps you find and compare bioinformatics training materials on GitHub and GitLab.
825 training materialsGlittr.org https://glittr.org https://tess.elixir-europe.org/content_providers/glittr-org Glittr (https://glittr.org) is a web application that helps you find and compare bioinformatics training materials on GitHub and GitLab. /system/content_providers/images/000/000/692/original/logo-with-domain.png?1698843802 -
BY-COVID
BeYond-COVID (BY-COVID) aims to provide comprehensive open data on SARS-CoV-2 and other infectious diseases across scientific, medical, public health and policy domains. It strongly emphasises mobilising raw viral sequences, helping to identify and monitor the spread of SARS-CoV-2 variants. The...
31 training materialsBY-COVID https://by-covid.org https://tess.elixir-europe.org/content_providers/by-covid BeYond-COVID (BY-COVID) aims to provide comprehensive open data on SARS-CoV-2 and other infectious diseases across scientific, medical, public health and policy domains. It strongly emphasises mobilising raw viral sequences, helping to identify and monitor the spread of SARS-CoV-2 variants. The project further accelerates access to SARS-CoV-2 and COVID-19 and linking patient and research data. To ensure interoperability of national and global efforts, BY-COVID enables federated data analysis compliant with data protection regulations, harmonise and manage metadata and sample identifiers, and facilitate long-term cataloguing. In an unprecedented and unique interdisciplinary effort, BY-COVID brings together 53 partners from 19 countries and stakeholders from the biomedical field, hospitals, public health, social sciences and humanities. Ultimately, it will improve European readiness for future pandemics, enhance genomic surveillance and rapid-response capabilities. In addition, BY-COVID serves as a demonstrator of interdisciplinary work across country borders. The project's outputs will allow scientists across multiple domains, including SMEs and industry, to access varied data with the potential to generate new knowledge on infectious diseases. /system/content_providers/images/000/000/810/original/BYCOVID_logo.png?1727690329 -
ERGA Knowledge Hub
The ERGA Knowledge Hub is an open, global home for Biodiversity Genomics teaching resources and courses curated by the European Reference Genome Atlas (ERGA) Community where you can share your lectures, tutorials, workshop materials, other learning tools, or upcoming courses, workshops, and...
128 training materials8 events (14 past events)ERGA Knowledge Hub https://knowledge.erga-biodiversity.eu/ https://tess.elixir-europe.org/content_providers/erga-knowledge-hub The ERGA Knowledge Hub is an open, global home for Biodiversity Genomics teaching resources and courses curated by the European Reference Genome Atlas (ERGA) Community where you can share your lectures, tutorials, workshop materials, other learning tools, or upcoming courses, workshops, and training events, in any language. /system/content_providers/images/000/000/827/original/ERGA-KH.png?1758638186
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