hands-on tutorial

Find which genes your variants fall in, in your browser

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A 15-minute hands-on tutorial: filter variants with bcftools and overlap them with annotated genes using bedtools intersect, all in the browser with nothing to install.

Licence: Creative Commons Attribution 4.0 International

Keywords: BED, VCF, bedtools intersect, genes, variant annotation, workflow

Competency level: • Beginner

Resource type: hands-on tutorial

Learning objectives:

  • Combine two inputs in one workflow
  • Count variants per gene
  • Overlap variants with gene coordinates using bedtools intersect
  • Read overlap output, including variants in overlapping genes

Authors: IEETA, University of Aveiro

External resources:
BioChef
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