TeSS (Training eSupport System)

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- Scientific topic
- Biological sequences9
- Sequence analysis9
- Sequence databases9
- Assembly8
- Sequence assembly8
- Community analysis7
- Comparative transcriptomics7
- Environmental microbiology7
- Metagenomics7
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- DNA variation5
- Genetic variation5
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- Mutation5
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- AMR1
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- WGS1
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- Tool
- FastQC
- Galaxy363
- SAMtools27
- MultiQC26
- Bioconductor24
- BWA21
- REDCap20
- Data Stewardship Wizard18
- BEDTools17
- fastp16
- scikit-learn16
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- scikit-image10
- taxonomy_krona_chart10
- NanoPlot9
- RDMkit9
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- FASTX-Toolkit8
- FreeBayes8
- BCFtools7
- BamTools7
- Trim Galore7
- msConvert7
- seqtk7
- Biopython6
- Flye6
- HISAT26
- MAFFT6
- MaxQuant6
- Minimap26
- Ontology Lookup Service6
- Open Babel6
- Unicycler6
- Workflow4Metabolomics6
- gffread6
- BridgeDb5
- COPASI5
- DESeq25
- European Nucleotide Archive (ENA)5
- Galactic Circos5
- MetaPhlAn5
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
- SRA Software Toolkit5
- Salmon5
- anndata5
- annotatemyids5
- compute_sequence_length5
- kraken25
- xcms5
- Bowtie 24
- Bwa-mem24
- CellProfiler4
- Chipster4
- Diamond4
- GOseq4
- KrakenTools4
- MACS4
- MSstats4
- Merqury4
- Newick Utilities4
- QualiMap4
- StringTie4
- The Protein Data Bank (PDB)4
- UniProt4
- bx-python4
- gffcompare4
- mothur4
- snpEff4
- Apollo3
- Bakta3
- Bracken3
- BridgeDbR3
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DISEASES3
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterMine3
- InterMineR3
- InterProScan (EBI)3
- MGnify (was EBI Metagenomics)3
- OMArk3
- OMERO3
- R3
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- Content provider
- GTN35
- Centre for Genomic Regulation (CRG)1
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- Keyword
- microgalaxy8
- Microbiome7
- Transcriptomics6
- Variant Analysis5
- Assembly4
- Epigenetics4
- Sequence analysis3
- assembly3
- nanopore3
- Genome Annotation2
- Introduction to Galaxy Analyses2
- Single Cell2
- biodiversity2
- cyoa2
- español2
- metagenomics2
- metatranscriptomics2
- prokaryote2
- 10x1
- BIoinformatics1
- CRISPR1
- ChIP-seq1
- EBV dataset1
- EBV workflow1
- Ecology1
- Heatmap1
- Nanopore data analysis1
- Nextflow1
- Pathogens detection1
- Phylogenetic tree1
- QC1
- RNA-seq1
- RStudio1
- Workflows1
- alternative splicing1
- amplicon1
- amr1
- beer1
- bulk1
- cell line1
- citizen science1
- collections1
- community composition EBV class1
- covid191
- deutsch1
- eDNA1
- epigenetics1
- essential genes1
- genetic composition EBV class1
- genome editing1
- gmod1
- isoform switching1
- italiano1
- jbrowse11
- metabarcoding1
- microbiome1
- mouse1
- nf-co.re1
- one-health1
- plants1
- polishing1
- rna-seq1
- taxonomic abundance1
- taxonomy1
- tuberculosis1
- viz1
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- Competency level
- Beginner33
- Intermediate2
- Advanced1
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- Licence
- Creative Commons Attribution 4.0 International35
- MIT License1
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- Target audience
- Students35
- Biologists interested in learning about RNA-seq1
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- Author
- Bérénice Batut12
- Maria Doyle5
- Saskia Hiltemann5
- Florian Heyl3
- Lucille Delisle3
- Paul Zierep3
- Pratik Jagtap3
- Simon Gladman3
- Subina Mehta3
- Alexandre Cormier2
- Anika Erxleben2
- Anna Syme2
- Anthony Bretaudeau2
- Anton Nekrutenko2
- Cristóbal Gallardo2
- Emma Leith2
- Engy Nasr2
- Erwan Corre2
- Helena Rasche2
- Laura Leroi2
- Leily Rabbani2
- Nicola Soranzo2
- Pavankumar Videm2
- Polina Polunina2
- Praveen Kumar2
- Ray Sajulga2
- Stéphanie Robin2
- Wolfgang Maier2
- Ahmed Hamid Awan1
- Alex Ostrovsky1
- Anna Delgado Tejedor1
- Ava Hoffman1
- Bazante Sanders1
- Belinda Phipson1
- Björn Grüning1
- Cameron Hyde1
- Coline Royaux1
- Daniel Maticzka1
- David Salgado1
- Eric Coissac1
- Fabian Andrade Lozano1
- Fidel Ramirez1
- Friederike Dündar1
- Frédéric Boyer1
- Harriet Dashnow1
- Iacopo Cristoferi1
- Julia Ponomarenko1
- Katarzyna Kamieniecka1
- Kenji Fujihara1
- Khaled Jum'ah1
- Krzysztof Poterlowicz1
- Luca Cozzuto1
- Marek Ostaszewski1
- Matti Hoch1
- Mehmet Tekman1
- Myrthe van Baardwijk1
- Natalie Kucher1
- Nick Stoler1
- Olivier Norvez1
- Peter van Heusden1
- Rand Zoabi1
- Robert Meller1
- Sarah Bonnin1
- Siyu Chen1
- Sylvia Mahara1
- Teresa Müller1
- Thoba Lose1
- Toni Hermoso Pulido1
- Torsten Houwaart1
- Twishi Gulati1
- Vini Salazar1
- Vivek Bhardwaj1
- Yvan Le Bras1
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- Contributor
- Helena Rasche34
- Saskia Hiltemann31
- Björn Grüning27
- Bérénice Batut23
- Cristóbal Gallardo19
- Nicola Soranzo13
- Anthony Bretaudeau7
- Niall Beard7
- Wolfgang Maier7
- Gildas Le Corguillé6
- William Durand6
- Lucille Delisle5
- Maria Doyle5
- Mehmet Tekman5
- Paul Zierep5
- Teresa Müller4
- Tristan Reynolds4
- Wendi Bacon4
- Alexandre Cormier3
- Florian Heyl3
- Martin Čech3
- Mateo Boudet3
- Pavankumar Videm3
- Anna Syme2
- Anne Fouilloux2
- Anup Kumar2
- Armin Dadras2
- Beatriz Serrano-Solano2
- Christine Oger2
- David López2
- Deepti Varshney2
- Engy Nasr2
- Hans-Rudolf Hotz2
- Joachim Wolff2
- Leily Rabbani2
- Linelle Abueg2
- Morgan Howells2
- Mélanie Petera2
- Natalie Kucher2
- Simon Gladman2
- Swathi Nataraj2
- Yvan Le Bras2
- Ahmed Hamid Awan1
- Alex Ostrovsky1
- Anika Erxleben1
- Anton Nekrutenko1
- Antonia Taiani1
- Ava Hoffman1
- Bazante Sanders1
- Bert Droesbeke1
- Candace Savonen1
- Ekaterina Polkh1
- Elizabeth Humphries1
- Frederick Tan1
- José Manuel Domínguez1
- Katarzyna Kamieniecka1
- Katherine Cox1
- Khaled Jum'ah1
- Marie Josse1
- Marisa Loach1
- Marius van den Beek1
- Matthias Bernt1
- Matti Hoch1
- Matúš Kalaš1
- Miaomiao Zhou1
- Mira Kuntz1
- Mohua Das1
- Natalie Whitaker-Allen1
- Nate Coraor1
- Nuwan Goonasekera1
- Peter van Heusden1
- Phil Reed1
- Polina Polunina1
- Sanjay Kumar Srikakulam1
- Simon Bray1
- Siyu Chen1
- Subina Mehta1
- Timon Schlegel1
- Verena Moosmann1
- Vijay1
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- Resource type
- e-learning27
- slides8
- Course materials1
- Training materials1
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- Related resource
- Associated Training Datasets35
- Associated Workflows34
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- Node
- Spain1
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- Collection
- ELIXIR hCNV community - collection of courses and materials.1
- ELIXIR Biodiversity Community1
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- Status
- Active1
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Training materials

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Training materials

ChIP-seq data analysis

An Introduction to Genome Assembly

Understanding Barcodes

A Short Introduction to Galaxy

Quality Control

Quality Control