Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Comparative transcriptomics8
    • Transcriptome8
    • Transcriptomics8
    • Epigenomics2
    • Show N_FILTERS more
    • Tool
    • Galaxy
    • Falco5
    • MultiQC4
    • Trim Galore4
    • BEDTools3
    • DESeq23
    • MACS3
    • SCANPY3
    • Biopython2
    • DeepTools2
    • FastQC2
    • SAMtools2
    • Salmon2
    • Targetfinder.org2
    • miRDeep22
    • BWA1
    • BamTools1
    • Bowtie 21
    • ChiRA1
    • DropletUtils1
    • FeatureCounts1
    • GOseq1
    • IDR1
    • JBrowse 21
    • MEME1
    • R1
    • RSeQC1
    • STAR1
    • SeqCode1
    • UCSC Genome Browser Utilities1
    • anndata1
    • blockbuster1
    • epiScanpy1
    • ggplot21
    • pathview1
    • Show N_FILTERS more
    • Content provider
    • GTN11
    • Show N_FILTERS more
    • Keyword
    • Transcriptomics5
    • Single Cell4
    • 10x3
    • Epigenetics2
    • plants2
    • ChIP-seq1
    • QC1
    • bulk1
    • collections1
    • cyoa1
    • deutsch1
    • drosophila1
    • epigenetics1
    • español1
    • italiano1
    • miRNA1
    • paper-replication1
    • rna-seq1
    • stress tolerance1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International11
    • Show N_FILTERS more
    • Target audience
    • Students11
    • Show N_FILTERS more
    • Author
    • Pavankumar Videm
    • Bérénice Batut44
    • Yvan Le Bras22
    • Saskia Hiltemann19
    • Subina Mehta17
    • Marie Josse14
    • Anne Fouilloux13
    • Mehmet Tekman13
    • Katherine Do12
    • Anton Nekrutenko11
    • Anup Kumar11
    • Helena Rasche11
    • Maria Doyle11
    • Simon Gladman11
    • Björn Grüning10
    • Wendi Bacon10
    • Cristóbal Gallardo9
    • Delphine Lariviere9
    • James Johnson9
    • Kaivan Kamali8
    • Anthony Bretaudeau7
    • Julia Jakiela7
    • Nicola Soranzo7
    • Wolfgang Maier7
    • Anika Erxleben6
    • Anna Syme6
    • Coline Royaux6
    • Dave Clements6
    • Paul Zierep6
    • Valentin Loux6
    • Daniel Blankenberg5
    • Dechen Bhuming5
    • Erwan Corre5
    • Joachim Wolff5
    • Melanie Föll5
    • Pratik Jagtap5
    • Alexandre Cormier4
    • Alireza Khanteymoori4
    • Amirhossein Naghsh Nilchi4
    • Beatriz Serrano-Solano4
    • Clemens Blank4
    • Diana Chiang Jurado4
    • Florian Heyl4
    • Hélène Chiapello4
    • Katarzyna Kamieniecka4
    • Krzysztof Poterlowicz4
    • Laura Leroi4
    • Lucille Delisle4
    • Mallory Freeberg4
    • Stéphanie Robin4
    • Vivek Bhardwaj4
    • Alex Ostrovsky3
    • Bazante Sanders3
    • Belinda Phipson3
    • Daniela Schneider3
    • Emma Leith3
    • Engy Nasr3
    • Fidel Ramirez3
    • Gildas Le Corguillé3
    • Jeremy Goecks3
    • Junhao Qiu3
    • Khaled Jum'ah3
    • Leonid Kostrykin3
    • Marisa Loach3
    • Mo Heydarian3
    • Morgan Howells3
    • Mélanie Petera3
    • Paulo Cilas Morais Lyra Junior3
    • Polina Polunina3
    • Simon Bray3
    • Torsten Seemann3
    • Anne Pajon2
    • Chao Zhang2
    • David Christiany2
    • Deepti Varshney2
    • Ekaterina Polkh2
    • Elisa Michon2
    • Esteban Perez-Wohlfeil2
    • Florence Combes2
    • Florian Christoph Sigloch2
    • Fotis E. Psomopoulos2
    • Friederike Dündar2
    • Hans-Rudolf Hotz2
    • Harriet Dashnow2
    • Helge Hecht2
    • Jean-François Martin2
    • Jon Trow2
    • Khai Van Dang2
    • Leily Rabbani2
    • Lisanna Paladin2
    • Marius van den Beek2
    • Matthias Fahrner2
    • Miguel Roncoroni2
    • Nadia Goué2
    • Olivier Norvez2
    • Pauline Seguineau2
    • Praveen Kumar2
    • Rand Zoabi2
    • Ray Sajulga2
    • Riccardo Massei2
    • Show N_FILTERS more
    • Contributor
    • Helena Rasche10
    • Björn Grüning9
    • Pavankumar Videm9
    • Saskia Hiltemann8
    • Cristóbal Gallardo6
    • Mehmet Tekman5
    • Bérénice Batut4
    • Wendi Bacon4
    • Beatriz Serrano-Solano3
    • Florian Heyl3
    • Hans-Rudolf Hotz3
    • Amirhossein Naghsh Nilchi2
    • Armin Dadras2
    • Lucille Delisle2
    • Marius van den Beek2
    • Martin Čech2
    • Nate Coraor2
    • Nicola Soranzo2
    • Wolfgang Maier2
    • Anika Erxleben1
    • Anthony Bretaudeau1
    • Anup Kumar1
    • Clea Siguret1
    • Clemens Blank1
    • Diana Chiang Jurado1
    • Donny Vrins1
    • Ekaterina Polkh1
    • Gildas Le Corguillé1
    • Graeme Tyson1
    • Joachim Wolff1
    • Leily Rabbani1
    • Maria Doyle1
    • Marisa Loach1
    • Niall Beard1
    • Simon Bray1
    • Teresa Müller1
    • Timon Schlegel1
    • Tristan Reynolds1
    • William Durand1
    • Show N_FILTERS more
    • Resource type
    • e-learning10
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets11
    • Associated Workflows11
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: Galaxy

and Competency level: Beginner

and Authors: Pavankumar Videm

11 materials found
  • e-learning

    CUT&RUN data analysis

    • Beginner
    Epigenomics Epigenetics
  • slides

    Whole transcriptome analysis of Arabidopsis thaliana

    • Beginner
    Transcriptomics Transcriptomics
  • e-learning

    Pre-processing of 10X Single-Cell ATAC-seq Datasets

    • Beginner
    10x Single Cell epigenetics
  • e-learning

    Formation of the Super-Structures on the Inactive X

    • Beginner
    Epigenomics ChIP-seq Epigenetics
  • e-learning

    RNA-RNA interactome data analysis

    • Beginner
    Transcriptomics Transcriptomics
  • e-learning

    Whole transcriptome analysis of Arabidopsis thaliana

    • Beginner
    Transcriptomics Transcriptomics miRNA plants stress tolerance
  • e-learning

    Pre-processing of 10X Single-Cell RNA Datasets

    • Beginner
    Transcriptomics 10x Single Cell
  • e-learning

    Analysis of plant scRNA-Seq Data with Scanpy

    • Beginner
    Transcriptomics Single Cell paper-replication plants
  • e-learning

    Clustering 3K PBMCs with Scanpy

    • Beginner
    Transcriptomics 10x Single Cell
  • e-learning

    Small Non-coding RNA Clustering using BlockClust

    • Beginner
    Transcriptomics Transcriptomics
  • 1
  • 2
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.