Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Biological sequences4
    • Community analysis4
    • Environmental microbiology4
    • Metagenomics4
    • Microbial ecology4
    • Microbiome4
    • Molecular community analysis4
    • Sequence analysis4
    • Sequence databases4
    • Shotgun metagenomics4
    • Comparative transcriptomics2
    • Function analysis2
    • Functional analysis2
    • Metatranscriptomics2
    • Protein function analysis2
    • Protein function prediction2
    • Taxonomy2
    • Transcriptome2
    • Transcriptomics2
    • Assembly1
    • Exomes1
    • Genome annotation1
    • Genomes1
    • Genomics1
    • Personal genomics1
    • Sequence assembly1
    • Synthetic genomics1
    • Viral genomics1
    • Whole genomes1
    • Show N_FILTERS more
    • Tool
    • Cutadapt
    • Galaxy182
    • FastQC24
    • SAMtools19
    • MultiQC14
    • BEDTools13
    • BWA12
    • SCANPY12
    • Falco11
    • DeepTools10
    • scikit-learn10
    • NanoPlot7
    • fastp7
    • taxonomy_krona_chart7
    • BamTools6
    • Bandage6
    • FreeBayes6
    • GEMINI6
    • JBrowse6
    • Trimmomatic6
    • ggplot26
    • STAR5
    • anndata5
    • MACS4
    • MetaPhlAn4
    • QUAST4
    • Trim Galore4
    • Unicycler4
    • BCFtools3
    • BLAST3
    • Bowtie 23
    • Bwa-mem23
    • Diamond3
    • DropletUtils3
    • FASTX-Toolkit3
    • Flye3
    • Galactic Circos3
    • Galaxy Image Analysis3
    • GraPhlAn3
    • HISAT23
    • Minimap23
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC3
    • RSeQC3
    • Salmon3
    • SortMeRNA3
    • Stacks3
    • export2graphlan3
    • humann3
    • kraken23
    • scikit-image3
    • seqtk3
    • snpEff3
    • Bakta2
    • Biopython2
    • Cardinal2
    • ChIPpeakAnno2
    • Combine Metaphlan and HUMAnN2
    • DESeq22
    • FASTQE2
    • GOEnrichment2
    • GOseq2
    • HUMAnN22
    • InterProScan (EBI)2
    • JBrowse 22
    • KrakenTools2
    • MEME2
    • MSstats2
    • MaxQuant2
    • Newick Utilities2
    • RStudio2
    • SRA Software Toolkit2
    • SeqCode2
    • UCSC Genome Browser Utilities2
    • UMI-tools2
    • Vcflib2
    • Workflow4Metabolomics2
    • annotatemyids2
    • bx-python2
    • clusterProfiler2
    • ewastools2
    • gfastats2
    • lofreq2
    • mothur2
    • pyGenomeTracks2
    • pycoQC2
    • staramr2
    • tbl2gff32
    • xcms2
    • ABRicate1
    • Alevin1
    • BUSCO1
    • Bowtie1
    • Bracken1
    • CellProfiler1
    • ChiRA1
    • Circos1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • CoverM1
    • EGSEA1
    • Show N_FILTERS more
    • Content provider
    • GTN9
    • Show N_FILTERS more
    • Keyword
    • Microbiome4
    • microgalaxy3
    • Sequence analysis2
    • Transcriptomics2
    • metatranscriptomics2
    • CRISPR1
    • Genome Annotation1
    • QC1
    • assembly1
    • cell line1
    • collections1
    • deutsch1
    • español1
    • essential genes1
    • genome editing1
    • italiano1
    • metagenomics1
    • mouse1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Intermediate2
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International9
    • Show N_FILTERS more
    • Target audience
    • Students9
    • Show N_FILTERS more
    • Author
    • Bérénice Batut6
    • Maria Doyle3
    • Pratik Jagtap3
    • Saskia Hiltemann3
    • Subina Mehta3
    • Alexandre Cormier2
    • Anthony Bretaudeau2
    • Emma Leith2
    • Erwan Corre2
    • Laura Leroi2
    • Paul Zierep2
    • Praveen Kumar2
    • Ray Sajulga2
    • Stéphanie Robin2
    • Belinda Phipson1
    • Cameron Hyde1
    • Daniel Maticzka1
    • Engy Nasr1
    • Florian Heyl1
    • Harriet Dashnow1
    • Kenji Fujihara1
    • Polina Polunina1
    • Twishi Gulati1
    • Vini Salazar1
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning
    • Helena Rasche10
    • Saskia Hiltemann10
    • Bérénice Batut7
    • Nicola Soranzo4
    • Anthony Bretaudeau3
    • Cristóbal Gallardo3
    • Paul Zierep3
    • Alexandre Cormier2
    • Christine Oger2
    • Gildas Le Corguillé2
    • Maria Doyle2
    • Mateo Boudet2
    • Niall Beard2
    • Swathi Nataraj2
    • William Durand2
    • Wolfgang Maier2
    • Anika Erxleben1
    • Anne Fouilloux1
    • Anup Kumar1
    • Engy Nasr1
    • Florian Heyl1
    • Lucille Delisle1
    • Marie Josse1
    • Matthias Bernt1
    • Mehmet Tekman1
    • Natalie Kucher1
    • Natalie Whitaker-Allen1
    • Pauline Seguineau1
    • Polina Polunina1
    • Simon Bray1
    • Subina Mehta1
    • Teresa Müller1
    • Verena Moosmann1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Resource type
    • e-learning7
    • slides2
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets9
    • Associated Workflows9
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: Cutadapt

and Competency level: Beginner

and Contributors: Björn Grüning

9 materials found
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data

    • Beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data (short)

    • Beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • e-learning

    Assembly of metagenomic sequencing data

    • Beginner
    Metagenomics Sequence assembly Microbial ecology Microbiome assembly metagenomics microgalaxy
  • slides

    Introduction to metatranscriptomics

    • Beginner
    Metagenomics Microbial ecology Microbiome
  • e-learning

    CRISPR screen analysis

    • Beginner
    Genomics CRISPR Genome Annotation cell line essential genes genome editing
  • e-learning

    CLIP-Seq data analysis from pre-processing to motif detection

    • Beginner
    Transcriptomics Transcriptomics
  • e-learning

    1: RNA-Seq reads to counts

    • Beginner
    Transcriptomics QC Transcriptomics collections mouse
  • e-learning

    Quality Control

    • Beginner
    Sequence analysis Sequence analysis deutsch español italiano
  • slides

    Quality Control

    • Beginner
    Sequence analysis Sequence analysis
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.