Training materials
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ELIXIR TeSS
e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• BeginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
ELIXIR TeSS
e-learning
Checking expected species and contamination in bacterial isolate
• BeginnerEcology Biodiversity Whole genome sequencing Genomics Microbiology Microbial ecology Ecology bacteria illumina microgalaxy -
ELIXIR TeSS
e-learning
16S Microbial Analysis with mothur (extended)
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
ELIXIR TeSS
e-learning
Binning of metagenomic sequencing data
•• IntermediateMetagenomics Microbial ecology Sequence assembly Microbiome binning metagenomics microgalaxy -
ELIXIR TeSS
e-learning
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
ELIXIR TeSS
e-learning
Assembly of metagenomic sequencing data
• BeginnerMetagenomics Sequence assembly Microbial ecology Microbiome assembly metagenomics microgalaxy -
ELIXIR TeSS
e-learning
16S Microbial Analysis with mothur (short)
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
ELIXIR TeSS
e-learning
Analyses of metagenomics data - The global picture
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding Microbiome microgalaxy -
ELIXIR TeSS
e-learning
Antibiotic resistance detection
• BeginnerMetagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial resistance Microbiome amr … -
ELIXIR TeSS
e-learning
16S Microbial analysis with Nanopore data
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy nanopore …