Training materials
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ELIXIR TeSS
e-learning
Taxonomic Profiling and Visualization of Metagenomic Data
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome metagenomics microgalaxy taxonomic profiling -
ELIXIR TeSS
e-learning
Fine tune large protein model (ProtTrans) using HuggingFace
• BeginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
ELIXIR TeSS
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• BeginnerMIGHTS Single Cell jupyter-notebook paper-replication -
ELIXIR TeSS
e-learning
Bacterial Genome Annotation
• BeginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod … -
ELIXIR TeSS
e-learning
Binning of metagenomic sequencing data
•• IntermediateMetagenomics Microbial ecology Sequence assembly Microbiome binning metagenomics microgalaxy -
ELIXIR TeSS
e-learning
Learning about one gene across biological resources and formats
• BeginnerSoftware engineering Foundations of Data Science deutsch español italiano work-in-progress -
ELIXIR TeSS
e-learning
Long non-coding RNAs (lncRNAs) annotation with FEELnc
•• IntermediateGenomics Genome Annotation eukaryote -
ELIXIR TeSS
e-learning
Exome sequencing data analysis for diagnosing a genetic disease
• BeginnerGenetic variation Variant Analysis -
ELIXIR TeSS
e-learning
Chloroplast genome assembly
• BeginnerSequence assembly Assembly biodiversity jbrowse1 nanopore plants -
ELIXIR TeSS
e-learning
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
•• IntermediateSequence assembly Chromosome conformation capture Assembly VGP biodiversity eukaryote pacbio