Materials - TeSS (Training eSupport System)

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- Scientific topic
- Genomics
- Genome annotation170
- MicroRNA sequencing161
- RNA sequencing161
- RNA-Seq161
- RNA-Seq analysis161
- Small RNA sequencing161
- Small RNA-Seq161
- Small-Seq161
- Transcriptome profiling161
- WTSS161
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- R152
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- Exomes148
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- Comparative transcriptomics138
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- High-throughput sequencing112
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- Bayesian methods94
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- Data rendering49
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- Metagenomics39
- Shotgun metagenomics39
- Breakend assembly38
- Genome assembly38
- Genomic assembly38
- Pipelines38
- Sequence assembly (genome assembly)38
- Software integration38
- Tool integration38
- Tool interoperability38
- Variant pattern analysis38
- Workflows38
- Antimicrobial stewardship33
- Functional genome annotation33
- Medical microbiology33
- Metagenome annotation33
- Microbial genetics33
- Microbial physiology33
- Microbial surveillance33
- Microbiological surveillance33
- Microbiology33
- Molecular infection biology33
- Molecular microbiology33
- Structural genome annotation33
- Bioinformatics32
- Bottom-up proteomics29
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- Bioconductor8
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- Genomics England | PanelApp1
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- Glittr.org76
- ERGA Knowledge Hub41
- European Bioinformatics Institute (EBI)12
- Bioconductor8
- Centre for Genomic Regulation (CRG)2
- ELIXIR Norway2
- Bioinformatics and Biomathematics Training Hub1
- CNAG-CRG1
- Department of Bioinformatics - BiGCaT, Maastricht University1
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- Keyword
- Genomics121
- Next generation sequencing46
- Variant analysis26
- Genome assembly20
- RNA-seq20
- R17
- Transcriptomics17
- Long read sequencing14
- Genome annotation12
- Unix/Linux12
- Comparative genomics10
- General9
- Data visualization8
- Epigenetics7
- Metagenomics6
- Single-cell sequencing6
- ATAC-seq5
- Data management5
- High performance computing5
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- Statistics5
- ChIP-seq4
- Epidemiology4
- Galaxy4
- Version control4
- Assembly Evaluation3
- Database Management3
- Machine learning3
- Multiomics3
- Python3
- Quality Control3
- Reproducibility3
- Artificial intelligence2
- Cloud computing2
- EeLP2
- FAIR data2
- FEGA2
- Federated EGA2
- Functional Genomics2
- Microbiology2
- Pathways and Networks2
- Phylogenetics / Phylogenomics2
- bioinformatics2
- eLearning2
- transcriptomics2
- RNA-Seq1
- API1
- Annotation1
- Assembly1
- Assembly Curation1
- Biocuration1
- BridgeDb1
- CWL1
- Conservation genomics1
- Containerization1
- Data science1
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- Designing functional genomics experiments1
- ELIXIR Converge1
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- ELIXIR-CONVERGE1
- Educational resources1
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- Gene lists1
- Genome sequencing1
- Gramene database1
- IBERS1
- Identifiers1
- Institute of Biological, Environmental and Rural Sciences1
- Introduction1
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- Large language models1
- Marine Metagenomics1
- Nextflow1
- Ontology1
- Perl1
- Programmatic access1
- Rmarkdown1
- Sequence alignments1
- Singularity1
- Snakemake1
- Spatial omics1
- Spatial transcriptomics1
- Workflows1
- covid191
- e-learning1
- evolution1
- human disease1
- multi-omics data integration1
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- Competency level
- Not specified
- Beginner46
- Intermediate13
- Advanced1
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- Licence
- License Not Specified99
- Creative Commons Attribution 4.0 International19
- GNU General Public License v3.0 only11
- MIT License11
- Creative Commons Zero v1.0 Universal4
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International2
- Creative Commons Attribution Non Commercial 4.0 International1
- Creative Commons Attribution Share Alike 4.0 International1
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- Target audience
- PhD students5
- Clinicians4
- Researchers4
- Biologists2
- Clinical Scientists2
- Bioinformatician1
- Bioinformaticians1
- Data Access Committeses from the EGA1
- Master students1
- Professors1
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA1
- Researchers and bioinformaticians involved in the VEIS project1
- clinicians and informaticians interested in cancer genetics1
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- Author
- Data Carpentry6
- bioinformatics.ca6
- Martin Morgan4
- The Gulbenkian Training Programme in Bioinformatics4
- Canadian Bioinformatics Workshops3
- NBIS - National Bioinformatics Infrastructure Sweden3
- SIB Swiss Institute of Bioinformatics3
- Bioinformatics, Rockefeller University2
- Boas Pucker2
- Hervé Pagès2
- Michael Lawrence2
- The Carpentries Lab2
- Alli Black1
- Andries Marees1
- Applied Genomics1
- Biocore@CRG1
- Biodiversity Genomics Academy 20231
- BiotrAIn1
- CRUK CI Bioinformatics Core1
- Computational Genomics with R1
- Computational Metagenomics1
- Dipannita Ghosh1
- Egon Willighagen1
- Eija Korpelainen1
- Ellen McDonagh1
- Eric C. Anderson1
- Erik Hjerde1
- Espen Aberg1
- Espen Mikal Robertsen1
- Fred Hutch Data Science Lab1
- Friederike Ehrhart1
- Functional Genomics Laboratory1
- IB-ULFRI1
- Jan Paces1
- Jonathan Mélius1
- Katharina Hoff1
- Kristyna Kupkova1
- Leonardo Collado-Torres1
- Mahul Chakraborty1
- Maria Lehtivaara1
- Melbourne Bioinformatics1
- Michael Squance1
- Mike Lee1
- Nanopore for Educators1
- Nils Peder Willassen1
- Nina Overgaard Therkildsen1
- Oslo Centre for Biostatistics and Epidemiology1
- Pachter Lab1
- Papenfuss Lab1
- Python club at University of Algarve1
- Raphael Mourad1
- Rebecca Foulger1
- Rob Waterhouse1
- SLU Global Bioinformatics Centre1
- SciLifeLab-Training1
- St. Jude Children's Research Hospital1
- Stephen Turner1
- Steven M. Van Belleghem1
- Teaching materials at the Harvard Chan Bioinformatics Core1
- The Griffith Lab1
- The McDonnell Genome Institute1
- Vasilis Lenis1
- Wellcome Connecting Science1
- cambiotraining1
- genomicsclass1
- gladstone-institutes1
- liulab-dfci1
- nour08101
- nullranges1
- rapidspeciation1
- zemZemTrainingOrg1
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- Contributor
- Canadian Bioinformatics Workshops8
- Erin Becker8
- François Michonneau8
- Toby Hodges8
- maneesha8
- Jason Williams7
- Tracy Teal7
- Zhian N. Kamvar7
- Bianca Peterson6
- C. Titus Brown6
- Taylor Reiter6
- Amanda Charbonneau5
- Dan Kerchner5
- Mark Fernandes5
- Rayna M Harris5
- Robert Davey5
- Anita Schürch4
- Nelly Sélem4
- Pete4
- Sarah Stevens4
- The Gulbenkian Training Programme in Bioinformatics4
- Annajiat Alim Rasel3
- Bob Freeman3
- Brittany N. Lasseigne, PhD3
- Bérénice Batut3
- David Pérez-Suárez3
- Fotis E. Psomopoulos3
- Hilmar Lapp3
- JCSzamosi3
- Jemma Stachelek3
- Kari L. Jordan, PhD3
- Katrin Leinweber3
- Michael R. Crusoe3
- Naupaka Zimmerman3
- Niclas Jareborg3
- Paula Andrea Martinez3
- Sam Nooij3
- Sarah Brown3
- murraycadzow3
- zhibinlu3
- Aaron E. Jaime2
- Abby Cabunoc Mayes2
- AbrahamAvelar2
- Ahmed Moustafa2
- Alana Alexander2
- Allen Lee2
- Andrew Sanchez2
- Andy Boughton2
- Aziz Khan2
- Boas Pucker2
- Brandon Curtis2
- Charlie Barclay2
- Chris Miller2
- Christina K.2
- CladoniaRang2
- Clara2
- Claudia Zirión Martínez2
- Darian2
- David Mawdsley2
- Dinindu Senanayake2
- EWheeler1232
- Edmund Miller2
- Erik Garrison2
- EvanWill2
- Finlay Maguire2
- Flavio Lombardo2
- Gabriel A. Devenyi2
- Geert van Geest2
- Graeme Grimes2
- Hadrien Gourlé2
- Ian Lee2
- Idowu Olawoye2
- J. Abel Lovaco2
- Jacques Dainat2
- Jared Simpson2
- Jeff Oliver2
- JesseKerkvliet2
- Joel Nothman2
- Jon Pipitone2
- Jonah Duckles2
- Karen Cranston2
- Karen Word2
- Kartik Singhal2
- Katie Anne Mills2
- Kelsy Cotto2
- Kevin Weitemier2
- Lex Nederbragt2
- M. Foos2
- Mariam Khanfar2
- Mateusz Kuzak2
- Matt Paul2
- Matthew Kweskin2
- Maxim Belkin2
- Michael Hansen2
- Michael Love2
- Miguel Cardoso2
- Ming Tang2
- My Hoang2
- Nick Young2
- Piotr Banaszkiewicz2
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- Resource type
- Recorded webinar8
- Video4
- e-learning4
- Slides3
- Tutorial3
- Presentation2
- Training materials2
- course materials2
- Scripts1
- knowledgebase1
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- Related resource
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Genomics England PanelApp1
- Introduction to the EGA and sharing sensitive data1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
- VEIS webinar: The essentials of DUO codes | Presentation1
- VEIS webinar: The essentials of DUO codes | Video1
- Video of the course1
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- Node
- Switzerland117
- EMBL-EBI12
- Spain3
- Czech Republic2
- Netherlands2
- Norway2
- Slovenia2
- Finland1
- United Kingdom1
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- Collection
- VEIS - Value of the EGA for Industry and Society3
- ELIXIR Biodiversity Community2
- ELIXIR Federated Human Data Community2
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- Status
- Active2
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Scientific topics: Genomics

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