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- Operation
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- Quality control5
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- Exome variant detection4
- Functional enrichment analysis4
- GSEA4
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- Genome variant detection4
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- Normalisation4
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- Data management planning3
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- Design2
- File format conversion2
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- Peptide database search2
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- Alignment1
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- Galaxy370
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- ggplot213
- BLAST12
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- QUAST12
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- RStudio11
- STAR11
- GEMINI10
- scikit-image10
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- FreeBayes9
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- FASTX-Toolkit8
- BCFtools7
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- Biopython7
- HISAT27
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- msConvert7
- seqtk7
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- MAFFT6
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- Minimap26
- Ontology Lookup Service6
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- RSeQC5
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- DropletUtils3
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- GenomeScope 2.03
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- NCBI Gene4
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- OBO Foundry2
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- RDA DMP Common Standard for Machine-Actionable Data Management Plans2
- STRING: functional protein association networks2
- Search Tool for Interactions of Chemicals2
- The European Genome-phenome Archive2
- The Observational Medical Outcomes Partnership Common Data Model2
- eNanoMapper Ontology2
- Wheat Data Interoperability Guidelines 1
- BRENDA1
- BcForms Grammar1
- Bioschemas1
- BpForms Grammar1
- BridgeDb1
- Cellosaurus1
- Chemical Entities of Biological Interest1
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- Datanator1
- FAIR sharing1
- FAIRtracks1
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- HumanMine1
- IUPAC International Chemical Identifier1
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- Integrated resource of protein families, domains and functional sites1
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- Investigation Study Assay Tabular1
- MDL molfile Format1
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- Multi-Crop Passport Descriptors1
- ObjTables1
- Observational Medical Outcomes Partnership Standard Vocabulary1
- PRINTS1
- Plant Phenotype Experiment Ontology1
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- Resource Identification Portal 1
- SUPERFAMILY1
- Schema.org1
- Simplified Molecular Input Line Entry Specification Format1
- Stress Knowledge Map1
- Structural Classification Of Proteins1
- The FAIR Principles1
- The Human Metabolome Database1
- UniProt Knowledgebase1
- Wheat Trait Ontology1
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- Khan Academy Statistics32
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- CSC - IT Center for Science12
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- BioData.pt6
- Data Steward team Ghent University6
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- ELIXIR-SI eLearning Platform (EeLP)6
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- Danish National Health Data Science Sandbox5
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- LIPID MAPS5
- UNIVERSE-HPC project5
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- Proteomics Academy4
- University of Cambridge Bioinformatics Training4
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- R332
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- RNA-seq128
- Next generation sequencing119
- Data management104
- Bioinformatics99
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- FAIR70
- Reproducibility69
- Galaxy Server administration68
- Machine learning68
- Data science67
- Unix/Linux62
- Single-cell sequencing61
- Proteomics56
- Workflows56
- jupyter-notebook55
- Version control53
- Data visualization52
- Foundations of Data Science51
- Variant analysis50
- biodiversity48
- data management48
- metagenomics47
- Statistics and machine learning46
- Development in Galaxy45
- Genome assembly43
- Single Cell42
- Galaxy41
- microgalaxy41
- Metagenomics39
- training39
- General36
- Genome annotation36
- Rare Diseases & Research36
- QC33
- Genome Annotation32
- Microbiome32
- Nextflow32
- FAIR Data, Workflows, and Research31
- Ecology30
- programming30
- Assembly28
- Contributing to the Galaxy Training Material28
- FAIR principles28
- Genome28
- Metadata28
- Molecular28
- Using Galaxy and Managing your Data28
- Alignment27
- Data analysis27
- Phylogenetics27
- biohackaton 201827
- Epigenetics26
- Long read sequencing26
- RDM26
- bioinformatics26
- Docker25
- Data reuse24
- High performance computing24
- Annotation23
- Containerization23
- Metabolomics23
- data stewardship23
- ChIP-seq22
- Microbiology22
- Shiny22
- Spatial transcriptomics22
- FAIR Data21
- Imaging21
- NGS21
- Open Science21
- RNA-Seq21
- ansible21
- metadata21
- reproducible research21
- Artificial intelligence20
- BAM20
- FASTQ20
- Research Data Management20
- life-sciences20
- sensitive data19
- 3D BioInfo Community19
- CfRR19
- Cloud computing19
- Differential-expression19
- Pre-processing19
- REDCap19
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- Creative Commons Attribution Non Commercial No Derivatives 4.0 International45
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- Creative Commons Attribution Non Commercial Share Alike 4.0 International41
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- Apache License 2.018
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- Other (Attribution)6
- Creative Commons Attribution 1.0 Generic5
- CeCILL Free Software License Agreement v2.13
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- Artistic License 2.02
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- GNU General Public License v2.0 only2
- Academic Free License v3.01
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- Target audience
- Students580
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- Graduate Students82
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- Bioinformaticians33
- Intermediate26
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- PhD candidates23
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- life scientists16
- Healthcare15
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- health professionals13
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- Computational biologists12
- Master students12
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- healthcare professionals12
- software developers, bioinformaticians12
- Biomedical Researchers11
- biocurators11
- Biomedical researchers9
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- biologists9
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- modelers8
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- Beginner7
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- Life scientists with programming skills7
- Clinical Scientists6
- computational scientists6
- data managers6
- plant researchers6
- Chemists5
- General Interest5
- Life Scientists5
- Undergraduate students5
- genomics researchers5
- postdocs5
- postgrad5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists with little or no prior computational experience4
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- Postgraduate students4
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- postdoctoral researchers4
- project manager4
- researchers4
- systems biologists4
- Bioinformatician, Bioanalysts3
- Data Steward3
- Database users3
- General Physicians3
- Ontologists3
- Policy makers3
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA3
- Technicians3
- data steward / data manager3
- geneticists3
- life science researchers3
- medical students3
- postdoc3
- programmers3
- research software engineers and researchers writing code3
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- Author
- Helena Rasche127
- Bérénice Batut111
- SIB Swiss Institute of Bioinformatics109
- Martin Morgan97
- Saskia Hiltemann66
- The Carpentries Incubator52
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- Simon Gladman37
- The Gulbenkian Training Programme in Bioinformatics36
- bioinformatics.ca35
- bebatut32
- bgruening32
- Yvan Le Bras29
- Anthony Bretaudeau28
- Anton Nekrutenko28
- Nate Coraor27
- Subina Mehta27
- Donat Agosti25
- John Chilton25
- Julia Giora25
- Nicola Soranzo25
- Plazi Verein25
- Teaching materials at the Harvard Chan Bioinformatics Core25
- Saskia Lawson-Tovey24
- The Carpentries24
- Egon Willighagen22
- Anne Fouilloux21
- Fotis E. Psomopoulos21
- Michelle Brazas21
- NBIS - National Bioinformatics Infrastructure Sweden20
- posit-conf-202320
- Coding for Reproducible Research Initiative19
- Marie Josse19
- Wendi Bacon19
- Bazante Sanders18
- Katarzyna Kamieniecka18
- Krzysztof Poterlowicz18
- Laura Cooper18
- Terri Attwood18
- UC Davis Bioinformatics Core Training Page18
- András Aszódi17
- Data Carpentry17
- Mehmet Tekman17
- Wandrille Duchemin17
- posit::conf(2024)17
- shiltemann17
- Paul Zierep16
- Cristóbal Gallardo15
- Samaha, Georgina15
- Sergio Martínez Cuesta15
- Alexander Botzki14
- Julia Jakiela14
- Maria Doyle14
- Mijke Jetten14
- Pratik Jagtap14
- nekrut14
- CRUK CI Bioinformatics Core13
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- James Johnson13
- Katherine Do13
- Monique Zahn13
- Wolfgang Maier13
- Andrew Mason12
- Anup Kumar12
- Celia van Gelder12
- Jenny Drnevich @jenny12
- Marius van den Beek12
- Melanie Föll12
- Patricia Palagi12
- Personalized Health Informatics Group12
- Simon Andrews12
- Simon Bray12
- Geert van Geest11
- Khaled Jum'ah11
- Mathieu Bourgey11
- Pavankumar Videm11
- Various11
- Allegra Via10
- Canadian Bioinformatics Workshops10
- Daniel Blankenberg10
- Eija Korpelainen10
- Fred Hutch Data Science Lab10
- Martin Čech10
- Paul Yorke10
- Anika Erxleben9
- David Wishart9
- ELIXIR Estonia9
- Jared Simpson9
- Lucille Delisle9
- Praveen Kumar9
- allegra.via Via9
- rstudio::conf(2022)9
- Anne Pajon8
- Avans Hogeschool8
- Bastian Schiffthaler @bastian8
- Boris Steipe8
- Diana Chiang Jurado8
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- Contributor
- Saskia Hiltemann594
- Helena Rasche501
- Björn Grüning427
- Bérénice Batut263
- Nicola Soranzo180
- Martin Čech128
- Anthony Bretaudeau107
- Cristóbal Gallardo104
- Niall Beard90
- Toby Hodges83
- Wendi Bacon77
- Nate Coraor70
- François Michonneau69
- Armin Dadras65
- Erin Becker63
- Gildas Le Corguillé63
- Marius van den Beek61
- William Durand59
- Zhian N. Kamvar59
- Mine Cetinkaya-Rundel56
- Robert Andrews55
- Katrin Leinweber54
- Raniere Silva54
- Simon Gladman54
- Tracy Teal53
- W. Trevor King52
- Andy Boughton51
- maneesha51
- Beatriz Serrano-Solano49
- Katie Anne Mills48
- Maxim Belkin48
- Pavankumar Videm48
- Teresa Müller48
- Lucille Delisle46
- Mehmet Tekman46
- Yvan Le Bras45
- David Pérez-Suárez44
- Gabriel A. Devenyi44
- Canadian Bioinformatics Workshops43
- Munazah Andrabi43
- Abby Cabunoc Mayes42
- EvanWill42
- Ian Lee42
- Jon Pipitone42
- Jonah Duckles42
- Michael Hansen42
- Piotr Banaszkiewicz42
- Brandon Curtis41
- David Mawdsley41
- Greg Wilson41
- Jemma Stachelek41
- Remi Rampin41
- Allen Lee40
- Andrew Sanchez40
- Michael R. Crusoe40
- Jeff Oliver39
- Joel Nothman39
- Nick Young39
- naught10139
- James Allen38
- Rémi Emonet38
- William L. Close38
- Rayna M Harris37
- Marie Josse36
- Wolfgang Maier36
- Melanie Föll35
- Sarah Brown35
- Gerard Capes34
- Anup Kumar33
- Maria Doyle33
- Renato Alves31
- trk31
- Ana Conrado29
- K.E. Koziar29
- Stephan Druskat29
- Christina K.28
- Simon Bray28
- Subina Mehta28
- Alex Whan27
- Anne Fouilloux26
- Paula Andrea Martinez26
- Michael Joseph25
- Anthony Gitter24
- Geert van Geest24
- João Rodrigues24
- Donny Vrins23
- Peter van Heusden23
- Robert Davey22
- Sarah Stevens22
- Julia Jakiela21
- Wolmar Nyberg Åkerström21
- actions-user21
- Henry Schreiner20
- Hilmar Lapp20
- Leonid Kostrykin20
- Bazante Sanders19
- The Gulbenkian Training Programme in Bioinformatics19
- Tristan Reynolds19
- Anton Nekrutenko18
- Elin Kronander18
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- slides191
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- Talk53
- lessons53
- Slides50
- tutorial50
- hands-on tutorial38
- video38
- Slidedeck31
- Documentation30
- course materials29
- exercise26
- Scripts20
- Exercise18
- Handout17
- Lecture16
- Poster16
- PDF14
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- E-learning9
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- FREE online course5
- online modules5
- tutorials5
- youtube video5
- examples4
- online course4
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- online tutorial3
- scripts3
- slideck/ presentation3
- API reference2
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- slides / presentation1
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- Related resource
- Associated Training Datasets331
- Associated Workflows309
- Jupyter Notebook (with Solutions)53
- Jupyter Notebook (without Solutions)53
- Input datasets34
- Research Data Management in Life Sciences11
- Associated slides9
- The Carpentries7
- Development in Galaxy slides6
- Quarto/RMarkdown Notebook6
- Proteomics dataset5
- Sequence analysis dataset5
- Transcriptomics dataset5
- Assembly dataset4
- Slides4
- Variant Analysis dataset4
- Assembly slides3
- DMPonline3
- Data Stewardship Wizard3
- Workshop recording3
- ChIP-Seq data analysis dataset2
- DisProt2
- Epigenetics dataset2
- Galaxy Server administration slides2
- Genome Annotation dataset2
- Metagenomics dataset2
- OpenCloning2
- Sequence analysis slides2
- pydna2
- ARROWSMITH1
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- COBRA Toolbox1
- CanCOGeN1
- Chipster1
- Contributing to the Galaxy Training Material slides1
- DMPortal1
- Data Visualisation (theory) 1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- EGA Submitter Portal Tutorial1
- ELIXIR's Impact Toolkit1
- ENA1
- Event1
- FAIR for busy biologists1
- FAIR in (biological) practice1
- FAIRplus FAIRification wizard1
- GEEM1
- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Galaxy project guided tours1
- Genome Annotation slides1
- Genomics England PanelApp1
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