Materials - TeSS (Training eSupport System)

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- Scientific topic
- Genomics
- MicroRNA sequencing125
- RNA sequencing125
- RNA-Seq125
- RNA-Seq analysis125
- Small RNA sequencing125
- Small RNA-Seq125
- Small-Seq125
- Transcriptome profiling125
- WTSS125
- Whole transcriptome shotgun sequencing125
- miRNA-seq125
- Genome annotation111
- Exomes103
- Genomes103
- Personal genomics103
- Synthetic genomics103
- Viral genomics103
- Whole genomes103
- R92
- R program92
- R script92
- Comparative transcriptomics89
- Transcriptome89
- Transcriptomics89
- Data management74
- Metadata management74
- Research data management (RDM)74
- Chromosome walking70
- Clone verification70
- DNA-Seq70
- DNase-Seq70
- High throughput sequencing70
- High-throughput sequencing70
- NGS70
- NGS data analysis70
- Next gen sequencing70
- Next generation sequencing70
- Panels70
- Primer walking70
- Sanger sequencing70
- Sequencing70
- Targeted next-generation sequencing panels70
- Bayesian methods66
- Biostatistics66
- Descriptive statistics66
- Gaussian processes66
- Inferential statistics66
- Markov processes66
- Multivariate statistics66
- Probabilistic graphical model66
- Probability66
- Statistics66
- Statistics and probability66
- Active learning50
- Ensembl learning50
- Kernel methods50
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- Neural networks50
- Recommender system50
- Reinforcement learning50
- Supervised learning50
- Unsupervised learning50
- Python41
- Python program41
- Python script41
- py41
- FAIR data38
- Findable, accessible, interoperable, reusable data38
- Rare diseases36
- Bioinformatics34
- Single-cell genomics34
- Single-cell sequencing34
- Antimicrobial stewardship32
- Medical microbiology32
- Microbial genetics32
- Microbial physiology32
- Microbial surveillance32
- Microbiological surveillance32
- Microbiology32
- Molecular infection biology32
- Molecular microbiology32
- Data rendering31
- Data visualisation31
- Metagenomics31
- Shotgun metagenomics31
- Pipelines30
- Software integration30
- Tool integration30
- Tool interoperability30
- Workflows30
- Bottom-up proteomics28
- Discovery proteomics28
- MS-based targeted proteomics28
- MS-based untargeted proteomics28
- Metaproteomics28
- Peptide identification28
- Protein and peptide identification28
- Proteomics28
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- Tool
- Bioconductor8
- BridgeDb1
- Data Stewardship Wizard1
- RDMkit1
- UCSC Genome Browser1
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- Standard database or policy
- European Nucleotide Archive1
- FAIRsharing1
- Genomics England | PanelApp1
- RDA DMP Common Standard for Machine-Actionable Data Management Plans1
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- Content provider
- Glittr.org52
- ERGA Knowledge Hub20
- European Bioinformatics Institute (EBI)12
- Bioconductor8
- Centre for Genomic Regulation (CRG)3
- Bioinformatics and Biomathematics Training Hub1
- CNAG-CRG1
- Department of Bioinformatics - BiGCaT, Maastricht University1
- ELIXIR Norway1
- VHP4Safety1
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- Keyword
- Genomics76
- Next generation sequencing26
- R13
- RNA-seq13
- Genome assembly11
- Variant analysis11
- Long read sequencing8
- Transcriptomics8
- Unix/Linux8
- Comparative genomics6
- Data visualization6
- General6
- Metagenomics5
- Population genetics5
- Genome annotation4
- Single-cell sequencing4
- ATAC-seq3
- Data management3
- Epidemiology3
- Epigenetics3
- Machine learning3
- Multiomics3
- Statistics3
- Version control3
- Artificial intelligence2
- ChIP-seq2
- Cloud computing2
- FAIR data2
- FEGA2
- Federated EGA2
- Galaxy2
- Phylogenetics / Phylogenomics2
- Python2
- Reproducibility2
- bioinformatics2
- API1
- Assembly Curation1
- Assembly Evaluation1
- Biocuration1
- BridgeDb1
- ChIP-Seq1
- Conservation genomics1
- Containerization1
- Data Life Cycle1
- Data Management Plan1
- Data Steward1
- Data Stewardship Wizard1
- Data management planning1
- Data science1
- Database Management1
- Designing functional genomics experiments1
- ELIXIR Converge1
- ELIXIR RIR, BridgeDb1
- ELIXIR-CONVERGE1
- Enrichment analysis1
- FASTA1
- FASTQC1
- GTF1
- Gene lists1
- Genome browser1
- Genome sequencing1
- Gramene database1
- High performance computing1
- IBERS1
- Identifiers1
- Institute of Biological, Environmental and Rural Sciences1
- Introduction1
- Julia1
- Large language models1
- Microbiology1
- Nextflow1
- Ontology1
- Pathways and Networks1
- Perl1
- Programmatic access1
- Quality Control1
- Research Data Management1
- Research Infrastructure1
- Rmarkdown1
- Sequence alignments1
- Singularity1
- Snakemake1
- Spatial omics1
- Workflows1
- covid191
- e-learning1
- evolution1
- human disease1
- multi-omics data integration1
- transcriptomics1
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- Competency level
- Not specified100
- Beginner3
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- Licence
- License Not Specified
- Creative Commons Attribution 4.0 International73
- GNU General Public License v3.0 only11
- MIT License11
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International5
- Creative Commons Zero v1.0 Universal4
- Creative Commons Attribution Non Commercial 4.0 International1
- Creative Commons Attribution Share Alike 4.0 International1
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- Target audience
- Clinicians4
- PhD students4
- Bioinformaticians2
- Biologists2
- Clinical Scientists2
- Life Science Researchers2
- Researchers2
- Bioinformatician, Bioanalysts1
- Biologists with little or no prior computational experience1
- Data Access Committeses from the EGA1
- Data Managers1
- Data Scientists1
- Data stewards1
- Life Scientists1
- Microbiologists1
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members1
- PhD candidates1
- PhD students in Genomics datascience1
- Principal Investigators1
- Principal Investigators (PIs)1
- Professors1
- Public Health Professionals1
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA1
- Researchers and bioinformaticians involved in the VEIS project1
- clinicians and informaticians interested in cancer genetics1
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- Author
- Data Carpentry6
- bioinformatics.ca6
- Martin Morgan4
- The Gulbenkian Training Programme in Bioinformatics4
- Canadian Bioinformatics Workshops3
- Hervé Pagès2
- Michael Lawrence2
- The Carpentries Lab2
- Andries Marees1
- Applied Genomics1
- Biocore@CRG1
- Bioinformatics, Rockefeller University1
- BiotrAIn1
- Computational Genomics with R1
- Computational Metagenomics1
- Egon Willighagen1
- Ellen McDonagh1
- Espen Åberg1
- Federico Bianchini1
- Friederike Ehrhart1
- Functional Genomics Laboratory1
- Global Biodiversity Information Facility1
- IB-ULFRI1
- Illimar Rekand1
- Jan Paces1
- Jonathan Mélius1
- Korbinian Bösl1
- Kristyna Kupkova1
- Leonardo Collado-Torres1
- Luca Cozzuto1
- Melbourne Bioinformatics1
- Michael Squance1
- Mike Lee1
- NBIS - National Bioinformatics Infrastructure Sweden1
- Nanopore for Educators1
- Nazeefa Fatima1
- Pachter Lab1
- Papenfuss Lab1
- Raf Winand1
- Raphael Mourad1
- Rebecca Foulger1
- SciLifeLab-Training1
- St. Jude Children's Research Hospital1
- Stephen Turner1
- Steven M. Van Belleghem1
- Teaching materials at the Harvard Chan Bioinformatics Core1
- The McDonnell Genome Institute1
- Toni Hermoso Pulido1
- Vasilis Lenis1
- Wellcome Connecting Science1
- cambiotraining1
- genomicsclass1
- gladstone-institutes1
- nullranges1
- rapidspeciation1
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- Contributor
- Canadian Bioinformatics Workshops8
- Erin Becker8
- François Michonneau8
- Toby Hodges8
- maneesha8
- Jason Williams7
- Tracy Teal7
- Zhian N. Kamvar7
- Bianca Peterson6
- C. Titus Brown6
- Taylor Reiter6
- Amanda Charbonneau5
- Dan Kerchner5
- Rayna M Harris5
- Robert Davey5
- Anita Schürch4
- Mark Fernandes4
- Nelly Sélem4
- Pete4
- Sarah Stevens4
- The Gulbenkian Training Programme in Bioinformatics4
- Annajiat Alim Rasel3
- Bob Freeman3
- Brittany N. Lasseigne, PhD3
- Bérénice Batut3
- David Pérez-Suárez3
- Fotis E. Psomopoulos3
- Hilmar Lapp3
- JCSzamosi3
- Jemma Stachelek3
- Kari L. Jordan, PhD3
- Katrin Leinweber3
- Michael R. Crusoe3
- Naupaka Zimmerman3
- Paula Andrea Martinez3
- Sam Nooij3
- Sarah Brown3
- murraycadzow3
- zhibinlu3
- Aaron E. Jaime2
- Abby Cabunoc Mayes2
- AbrahamAvelar2
- Ahmed Moustafa2
- Alana Alexander2
- Allen Lee2
- Andrew Sanchez2
- Andy Boughton2
- Aziz Khan2
- Brandon Curtis2
- Charlie Barclay2
- Christina K.2
- CladoniaRang2
- Clara2
- Claudia Zirión Martínez2
- Darian2
- David Mawdsley2
- Dinindu Senanayake2
- EWheeler1232
- Edmund Miller2
- Erik Garrison2
- EvanWill2
- Finlay Maguire2
- Gabriel A. Devenyi2
- Graeme Grimes2
- Ian Lee2
- Idowu Olawoye2
- J. Abel Lovaco2
- Jared Simpson2
- Jeff Oliver2
- JesseKerkvliet2
- Joel Nothman2
- Jon Pipitone2
- Jonah Duckles2
- Karen Cranston2
- Karen Word2
- Katie Anne Mills2
- Kevin Weitemier2
- Lex Nederbragt2
- M. Foos2
- Mateusz Kuzak2
- Matthew Kweskin2
- Maxim Belkin2
- Michael Hansen2
- Michael Love2
- Miguel Cardoso2
- Nick Young2
- Niclas Jareborg2
- Piotr Banaszkiewicz2
- Raniere Silva2
- Remi Rampin2
- Salehkarim212
- Sangram K Sahu2
- Sheldon McKay2
- Stephen Turner2
- Sue McClatchy2
- Val Gartner2
- W. Trevor King2
- William L. Close2
- alanaschick2
- annmeyer2
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- Resource type
- Recorded webinar8
- Video4
- e-learning4
- Tutorial3
- Presentation2
- Course materials1
- Slides1
- Training materials1
- knowledgebase1
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- Related resource
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Genomics England PanelApp1
- Introduction to the EGA and sharing sensitive data1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
- VEIS webinar: The essentials of DUO codes | Presentation1
- VEIS webinar: The essentials of DUO codes | Video1
- Video of the course1
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- Node
- Switzerland72
- EMBL-EBI12
- Spain4
- Netherlands2
- Belgium1
- Czech Republic1
- Norway1
- United Kingdom1
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- Collection
- VEIS - Value of the EGA for Industry and Society3
- ELIXIR Federated Human Data Community2
- ELIXIR Biodiversity Community1
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- Status
- Active3
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Scientific topics: Genomics

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