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- Data management229
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- Operation
- Data handling46
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- Data analysis13
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- File format conversion2
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- Peptide database search2
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- Quality control2
- RNA-Seq analysis2
- Validation2
- Alignment1
- Alignment construction1
- Alignment generation1
- Allele calling1
- Annotation1
- Biological network analysis1
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- Biological network prediction1
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- Data brokering1
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- Exome variant detection1
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- Functional genome annotation1
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- Genome annotation1
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- Germ line variant calling1
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- Mutation detection1
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- Protein expression analysis1
- Read pre-processing1
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- Somatic variant calling1
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- Galaxy370
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- fastp16
- scikit-learn16
- JBrowse15
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- Falco14
- ggplot214
- DeepTools13
- BLAST12
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- GEMINI10
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- NanoPlot9
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- FASTX-Toolkit8
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- msConvert7
- seqtk7
- Biopython6
- Flye6
- HISAT26
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- Ontology Lookup Service6
- Open Babel6
- Unicycler6
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- COPASI5
- DESeq25
- Galactic Circos5
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- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
- SRA Software Toolkit5
- Salmon5
- anndata5
- annotatemyids5
- compute_sequence_length5
- kraken25
- xcms5
- Bowtie 24
- Bwa-mem24
- CellProfiler4
- Chipster4
- Diamond4
- European Nucleotide Archive (ENA)4
- GOseq4
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- MACS4
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- Merqury4
- Newick Utilities4
- QualiMap4
- StringTie4
- The Protein Data Bank (PDB)4
- UniProt4
- bx-python4
- gffcompare4
- mothur4
- snpEff4
- Apollo3
- Bakta3
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- BridgeDbR3
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DISEASES3
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterMine3
- InterMineR3
- InterProScan (EBI)3
- MGnify (was EBI Metagenomics)3
- OMArk3
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- Standard database or policy
- NCBI Gene4
- FAIRsharing3
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- DisProt2
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- European Nucleotide Archive2
- Minimum Information about Plant Phenotyping Experiment2
- OBO Foundry2
- Ontology Lookup Service2
- PRoteomics IDEntifications database2
- RDA DMP Common Standard for Machine-Actionable Data Management Plans2
- STRING: functional protein association networks2
- Search Tool for Interactions of Chemicals2
- The European Genome-phenome Archive2
- The Observational Medical Outcomes Partnership Common Data Model2
- eNanoMapper Ontology2
- Wheat Data Interoperability Guidelines 1
- BRENDA1
- Bioschemas1
- BridgeDb1
- Cellosaurus1
- Chemical Entities of Biological Interest1
- Crop Ontology1
- FAIRtracks1
- Genomics England | PanelApp1
- HumanMine1
- IUPAC International Chemical Identifier1
- Identifiers.org Registry1
- Integrated resource of protein families, domains and functional sites1
- Investigation Study Assay JSON1
- Investigation Study Assay Tabular1
- MDL molfile Format1
- ModelArchive1
- Multi-Crop Passport Descriptors1
- Observational Medical Outcomes Partnership Standard Vocabulary1
- PRINTS1
- Plant Phenotype Experiment Ontology1
- Research Object Crate1
- Resource Identification Portal 1
- Schema.org1
- Simplified Molecular Input Line Entry Specification Format1
- Stress Knowledge Map1
- The FAIR Principles1
- The Human Metabolome Database1
- UniProt Knowledgebase1
- Wheat Trait Ontology1
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- Worldwide Protein Data Bank1
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- Glittr.org816
- GTN801
- European Bioinformatics Institute (EBI)495
- ERGA Knowledge Hub128
- SIB Swiss Institute of Bioinformatics111
- GOBLET108
- Australian BioCommons90
- ELXIR-UK DaSH70
- Software Carpentry70
- ELIXIR69
- DTLS - Dutch Techcentre For Life Sciences41
- de.NBI36
- VIB Training & Conferences35
- Khan Academy Statistics32
- IFB French Institute of Bioinformatics31
- BY-COVID25
- Canadian Bioinformatics Workshops25
- Bioconductor24
- Bioinformatics and Biomathematics Training Hub21
- Coding for Reproducible Research (CfRR)19
- Coursera18
- ELIXIR Portugal18
- CINECA PROJECT15
- ELIXIR Estonia12
- PerMedCoE12
- NBIS11
- VHP4Safety10
- eNanoMapper10
- Bioschemas9
- CSC - IT Center for Science9
- Data Carpentry9
- NanoCommons9
- Barcelona Supercomputing Center (BSC)8
- Department of Bioinformatics - BiGCaT, Maastricht University8
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- Centre for Genomic Regulation (CRG)7
- InterMine7
- BioData.pt6
- Data Steward team Ghent University6
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- ELIXIR-SI eLearning Platform (EeLP)6
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- LIPID MAPS5
- University of Cambridge Bioinformatics Training4
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- University of Edinburgh3
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- FAIRsharing1
- Fraunhofer FIT1
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- Open Science MOOC1
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- UCLouvain Bioinformatics Platform1
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- Keyword
- R320
- Transcriptomics152
- Genomics148
- Python142
- Next generation sequencing115
- RNA-seq115
- Data management101
- Bioinformatics95
- FAIR data77
- Statistics77
- Galaxy Server administration68
- Machine learning67
- FAIR66
- Reproducibility66
- Data science63
- Unix/Linux61
- Single-cell sequencing59
- jupyter-notebook54
- Proteomics53
- Workflows53
- Foundations of Data Science51
- Version control51
- Data visualization49
- Variant analysis48
- biodiversity48
- data management48
- Development in Galaxy45
- Statistics and machine learning44
- Genome assembly43
- Single Cell42
- microgalaxy41
- training38
- General36
- Genome annotation36
- Metagenomics35
- Genome Annotation32
- FAIR Data, Workflows, and Research31
- Microbiome31
- Nextflow31
- Ecology30
- programming30
- Contributing to the Galaxy Training Material28
- Using Galaxy and Managing your Data28
- Assembly27
- Metadata27
- metagenomics27
- Data analysis26
- Epigenetics26
- Long read sequencing26
- RDM25
- Data reuse24
- FAIR principles24
- Containerization23
- High performance computing23
- Docker22
- Microbiology22
- Rare Diseases & Research22
- Spatial transcriptomics22
- data stewardship22
- FAIR Data21
- Imaging21
- Open Science21
- Shiny21
- ansible21
- reproducible research21
- Metabolomics20
- sensitive data19
- 3D BioInfo Community19
- Artificial intelligence19
- CfRR19
- ChIP-seq19
- Galaxy19
- REDCap19
- Variant Analysis19
- git-gat19
- life-sciences19
- metadata19
- scientific computing19
- Cloud computing18
- Comparative genomics18
- Programming18
- interactive-tools18
- Climate17
- Data sharing17
- Sequence analysis17
- Teaching and Hosting Galaxy training17
- fair17
- prokaryote17
- work-in-progress17
- HemaFAIR16
- Introduction to Galaxy Analyses16
- Research Data Management16
- Roslin Institute16
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- jbrowse116
- Data mining15
- Quarto15
- bioinformatics15
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- Competency level
- Not specified2284
- Beginner918
- Intermediate257
- Advanced43
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- License Not Specified1778
- Creative Commons Attribution 4.0 International1238
- Creative Commons Attribution Share Alike 4.0 International139
- MIT License118
- GNU General Public License v3.0 only50
- Creative Commons Zero v1.0 Universal40
- Creative Commons Attribution Non Commercial Share Alike 4.0 International36
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International24
- Apache License 2.018
- Other (Not Open)16
- BSD 3-Clause "New" or "Revised" License14
- Creative Commons Attribution Non Commercial 4.0 International10
- Creative Commons Attribution 1.0 Generic5
- Creative Commons Attribution No Derivatives 4.0 International3
- Artistic License 2.02
- GNU Affero General Public License v3.0 only2
- GNU General Public License v2.0 only2
- Creative Commons Attribution 2.0 Generic1
- Creative Commons Attribution No Derivatives 2.0 Generic1
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- Do What The F*ck You Want To Public License1
- Open Data Commons Attribution License v1.01
- Other (Open)1
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- Target audience
- Students576
- PhD students153
- Clinicians129
- Galaxy Administrators113
- Researchers88
- Instructors53
- Biologists45
- Life Science Researchers44
- Novice44
- bioinformaticians35
- Bioinformaticians33
- Intermediate26
- PhD candidate26
- Scientific community26
- PhD candidates23
- Biologists, Genomicists, Computer Scientists22
- Data stewards21
- post-docs20
- Bench biologists18
- Data Managers18
- Scientists18
- Academia/ Research Institution17
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- Non-Profit Organisation17
- Beginners16
- Data Scientist16
- Data Scientists16
- Data managers16
- Graduate Students16
- Trainers16
- life scientists16
- Post-Doctoral Fellows15
- beginner bioinformaticians15
- Healthcare14
- PhD Students13
- Researcher in life sciences13
- Research Scientists12
- data stewards12
- Biomedical Researchers11
- Computational biologists11
- Master students11
- biocurators11
- software developers, bioinformaticians11
- health professionals10
- Biomedical researchers9
- Life scientists9
- Researcher9
- Training Designers9
- Training instructors9
- biologists9
- Beginner7
- Bioinformatician7
- PhD7
- Post Docs7
- modelers7
- Health Care Professionals6
- Life scientists with programming skills6
- data managers6
- healthcare professionals6
- Chemists5
- Clinical Scientists5
- General Interest5
- Graduate students5
- Life Scientists5
- computational scientists5
- plant researchers5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists with little or no prior computational experience4
- Curators4
- Laboratory technicians4
- PI4
- Patient Advocates 4
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members4
- Postgraduate students4
- Undergraduate students4
- Veterinarians4
- postdocs4
- postgrad4
- project manager4
- rare disease patients representatives3
- Bioinformatician, Bioanalysts3
- Data Steward3
- Database users3
- Ontologists3
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA3
- Technicians3
- data steward / data manager3
- geneticists3
- genomics researchers3
- life science researchers3
- postdoc3
- programmers3
- researchers3
- software engineers3
- teachers3
- Academics2
- Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities2
- Beginner informatics2
- Bioinformaticians, Biologists with little or no prior computational experience.2
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- Author
- Helena Rasche127
- Bérénice Batut111
- SIB Swiss Institute of Bioinformatics108
- Saskia Hiltemann66
- The Carpentries Incubator52
- Björn Grüning50
- The Gulbenkian Training Programme in Bioinformatics36
- bioinformatics.ca35
- Simon Gladman33
- Yvan Le Bras29
- Anthony Bretaudeau28
- Anton Nekrutenko28
- Nate Coraor27
- bebatut27
- Subina Mehta26
- Donat Agosti25
- John Chilton25
- Julia Giora25
- Nicola Soranzo25
- Plazi Verein25
- bgruening25
- Saskia Lawson-Tovey24
- The Carpentries24
- Egon Willighagen22
- Anne Fouilloux21
- Fotis E. Psomopoulos21
- Michelle Brazas21
- NBIS - National Bioinformatics Infrastructure Sweden20
- posit-conf-202320
- Coding for Reproducible Research Initiative19
- Marie Josse19
- Wendi Bacon19
- Bazante Sanders18
- Katarzyna Kamieniecka18
- Krzysztof Poterlowicz18
- Laura Cooper18
- Terri Attwood18
- UC Davis Bioinformatics Core Training Page18
- Data Carpentry17
- Mehmet Tekman17
- Teaching materials at the Harvard Chan Bioinformatics Core17
- posit::conf(2024)17
- Paul Zierep16
- Wandrille Duchemin16
- Cristóbal Gallardo15
- Martin Morgan15
- Samaha, Georgina15
- Maria Doyle14
- Mijke Jetten14
- Pratik Jagtap14
- CRUK CI Bioinformatics Core13
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- Julia Jakiela13
- Monique Zahn13
- Sergio Martínez Cuesta13
- Wolfgang Maier13
- shiltemann13
- Andrew Mason12
- Anup Kumar12
- Celia van Gelder12
- James Johnson12
- Katherine Do12
- Marius van den Beek12
- Melanie Föll12
- Patricia Palagi12
- Personalized Health Informatics Group12
- Simon Bray12
- nekrut12
- Khaled Jum'ah11
- Pavankumar Videm11
- Alexander Botzki10
- Canadian Bioinformatics Workshops10
- Daniel Blankenberg10
- Fred Hutch Data Science Lab10
- Geert van Geest10
- Martin Čech10
- Paul Yorke10
- Anika Erxleben9
- ELIXIR Estonia9
- Lucille Delisle9
- Praveen Kumar9
- allegra.via Via9
- rstudio::conf(2022)9
- Allegra Via8
- Anne Pajon8
- Avans Hogeschool8
- Diana Chiang Jurado8
- Diana Pilvar8
- Emma Leith8
- Gildas Le Corguillé8
- Helen Brown8
- Joachim Wolff8
- Kaivan Kamali8
- Maria Levchenko8
- Matthias Fahrner8
- Robert Andrews8
- Sara Morsy8
- Stéphanie Robin8
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- Contributor
- Saskia Hiltemann592
- Helena Rasche501
- Björn Grüning427
- Bérénice Batut261
- Nicola Soranzo180
- Martin Čech128
- Anthony Bretaudeau107
- Cristóbal Gallardo104
- Niall Beard90
- Toby Hodges83
- Wendi Bacon77
- Nate Coraor70
- François Michonneau68
- Armin Dadras65
- Gildas Le Corguillé63
- Erin Becker62
- Marius van den Beek61
- William Durand59
- Zhian N. Kamvar59
- Mine Cetinkaya-Rundel56
- Robert Andrews55
- Simon Gladman54
- Katrin Leinweber53
- Raniere Silva53
- Tracy Teal53
- W. Trevor King51
- maneesha51
- Andy Boughton50
- Beatriz Serrano-Solano48
- Pavankumar Videm48
- Teresa Müller48
- Katie Anne Mills47
- Maxim Belkin47
- Lucille Delisle46
- Mehmet Tekman46
- Yvan Le Bras45
- Canadian Bioinformatics Workshops43
- David Pérez-Suárez43
- Gabriel A. Devenyi43
- Munazah Andrabi43
- Abby Cabunoc Mayes41
- EvanWill41
- Ian Lee41
- Jon Pipitone41
- Jonah Duckles41
- Michael Hansen41
- Piotr Banaszkiewicz41
- Brandon Curtis40
- David Mawdsley40
- Greg Wilson40
- Jemma Stachelek40
- Remi Rampin40
- Allen Lee39
- Andrew Sanchez39
- Michael R. Crusoe39
- James Allen38
- Jeff Oliver38
- Joel Nothman38
- Nick Young38
- Rémi Emonet38
- naught10138
- Rayna M Harris37
- William L. Close37
- Marie Josse36
- Wolfgang Maier36
- Melanie Föll35
- Sarah Brown35
- Anup Kumar33
- Gerard Capes33
- Maria Doyle33
- Renato Alves31
- trk30
- Ana Conrado29
- Stephan Druskat29
- Christina K.28
- K.E. Koziar28
- Simon Bray28
- Subina Mehta28
- Alex Whan27
- Anne Fouilloux26
- Paula Andrea Martinez26
- Michael Joseph25
- Anthony Gitter24
- Geert van Geest24
- João Rodrigues24
- Donny Vrins23
- Peter van Heusden23
- Robert Davey22
- Sarah Stevens22
- Wolmar Nyberg Åkerström21
- actions-user21
- Henry Schreiner20
- Hilmar Lapp20
- Julia Jakiela20
- Leonid Kostrykin20
- Bazante Sanders19
- The Gulbenkian Training Programme in Bioinformatics19
- Tristan Reynolds19
- Anton Nekrutenko18
- Elin Kronander18
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- e-learning726
- Recorded webinar307
- Video188
- slides184
- Tutorial122
- Webinar105
- Training materials70
- Presentation63
- Course materials61
- lessons50
- tutorial48
- Slides44
- hands-on tutorial38
- video38
- Slidedeck31
- Documentation30
- course materials25
- exercise25
- Scripts20
- Exercise18
- Handout17
- Lecture16
- E-learning9
- PDF9
- E-Learning8
- Online material6
- Bioinformatics5
- Coding5
- Talk5
- tutorials5
- youtube video5
- Series of videos4
- Jupyter notebook4
- online course4
- online modules4
- Book3
- Computational Biology3
- Computer Science3
- Data Science3
- Education3
- How-to guide3
- Learning pathway3
- Life Sciences Literature Database3
- Mock data3
- Programming3
- e-Learning3
- examples3
- online tutorial3
- slideck/ presentation3
- API reference2
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- Manual2
- Open educational resource2
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- case studies2
- educational materials2
- handbook2
- knowledgebase2
- presentation2
- scripts2
- workflow2
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- E-learning + workshop1
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- Transcriptomics1
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- slides / presentation1
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- Related resource
- Associated Training Datasets331
- Associated Workflows308
- Jupyter Notebook (with Solutions)51
- Jupyter Notebook (without Solutions)51
- Input datasets32
- Research Data Management in Life Sciences11
- Associated slides9
- The Carpentries7
- Quarto/RMarkdown Notebook6
- Proteomics dataset5
- Sequence analysis dataset5
- Transcriptomics dataset5
- Assembly dataset4
- Variant Analysis dataset4
- Assembly slides3
- DMPonline3
- Data Stewardship Wizard3
- Development in Galaxy slides3
- Slides3
- Workshop recording3
- ChIP-Seq data analysis dataset2
- DisProt2
- Epigenetics dataset2
- Genome Annotation dataset2
- Metagenomics dataset2
- Sequence analysis slides2
- ARROWSMITH1
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- COBRA Toolbox1
- CanCOGeN1
- Contributing to the Galaxy Training Material slides1
- DMPortal1
- Data Visualisation (theory) 1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- EGA Submitter Portal Tutorial1
- ELIXIR's Impact Toolkit1
- ENA1
- Event1
- FAIR for busy biologists1
- FAIR in (biological) practice1
- GEEM1
- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Galaxy Server administration slides1
- Galaxy project guided tours1
- Genome Annotation slides1
- Genomics England PanelApp1
- GitHub1
- HoloFood Project1
- Introduction to Galaxy Analyses dataset1
- Introduction to Galaxy dataset1
- Introduction to the EGA and sharing sensitive data1
- MGnify1
- MetaboLights1
- MobiDB1
- Next generation biobanking ontology (NGBO)1
- OpenCloning1
- OpenRefine1
- Public Health Alliance for Genomic Epidemiology1
- R basics1
- RDMkit1
- REPET image Docker1
- RNA-seq data package1
- Ready For BioData Management?1
- Slides for Introduction to statistics with R 1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
- Statistics dataset1
- Transcriptomics slides1
- User Interface and Features dataset1
- VEIS webinar: The essentials of DUO codes | Presentation1
- VEIS webinar: The essentials of DUO codes | Video1
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- Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
- Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
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- elabFTW1
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- PHENotyping and EnviroTyping (PHENET training collection)20
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- ELIXIR SIS-Containers - collection of training materials9
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- Elements of Data Management7
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- SARS-CoV-2 : Studying a new virus5
- RDMbites: Equality, Diversity, Inclusion and Justice in RDM4
- VEIS - Value of the EGA for Industry and Society3
- Impact of research infrastructures2
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- Byte-sized RSE series1
- ELIXIR hCNV community - collection of courses and materials.1
- Single-cell Omics Community - collection of courses and materials1
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