Training materials
-
e-learning
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
•• IntermediateMetagenomics Microbial ecology Sequence assembly Microbiome assembly binning metagenomics microgalaxy -
e-learning
Hybrid genome assembly - Nanopore and Illumina
• BeginnerSequence assembly Assembly assembly denovo genomics illumina nanopore -
e-learning
Comparison of two annotation tools - Helixer and Braker3
•• IntermediateGenomics Sequence assembly Braker3 Genome Annotation Helixer biodiversity eukaryota jbrowse1 -
slides
Genome assembly and assembly QC - Introduction short version
• BeginnerSequence assembly Assembly -
e-learning
Genome annotation with Braker3
•• IntermediateGenomics Sequence assembly Biodiversity Zoology Plant biology Braker3 Genome Annotation biodiversity eukaryota jbrowse1 -
Recorded webinar
MGnify Proteins: a new resource of 2.5 billion proteins for exploring metagenomics sequence space
Metagenomics Microbial ecology Microbiology Metatranscriptomics Sequence assembly
-
e-learning
Decontamination of a genome assembly
• BeginnerSequence assembly Genomics Biodiversity Assembly biodiversity -
e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• BeginnerSequence assembly Genomics Biodiversity Mitochondria Assembly biodiversity -
e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• BeginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
e-learning
Binning of metagenomic sequencing data
•• IntermediateMetagenomics Microbial ecology Sequence assembly Microbiome binning metagenomics microgalaxy