Training materials
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e-learning
Checking expected species and contamination in bacterial isolate
• BeginnerEcology Biodiversity Whole genome sequencing Genomics Microbiology Microbial ecology Ecology bacteria illumina microgalaxy -
e-learning
Clinical Metaproteomics 5: Data Interpretation
• BeginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
Clinical Metaproteomics 4: Quantitation
• BeginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
Clinical Metaproteomics 3: Verification
• BeginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
Clinical Metaproteomics 1: Database-Generation
• BeginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
Clinical Metaproteomics 2: Discovery
• BeginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
16S Microbial Analysis with mothur (extended)
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
e-learning
Binning of metagenomic sequencing data
•• IntermediateMetagenomics Microbial ecology Sequence assembly Microbiome binning metagenomics microgalaxy -
e-learning
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
e-learning
Metatranscriptomics analysis using microbiome RNA-seq data
• BeginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy