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- Scientific topic
- Exomes47
- Genome annotation47
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- Personal genomics47
- Synthetic genomics47
- Viral genomics47
- Whole genomes47
- Biodiversity40
- Bottom-up proteomics38
- Discovery proteomics38
- MS-based targeted proteomics38
- MS-based untargeted proteomics38
- Metaproteomics38
- Peptide identification38
- Protein and peptide identification38
- Proteomics38
- Quantitative proteomics38
- Targeted proteomics38
- Top-down proteomics38
- Comparative transcriptomics37
- Transcriptome37
- Transcriptomics37
- Bayesian methods35
- Biostatistics35
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- Gaussian processes35
- Inferential statistics35
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- Biological sequences33
- Sequence analysis33
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- Assembly31
- Sequence assembly31
- Computational ecology29
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- Ecology29
- Ecosystem science29
- Community analysis25
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- Metagenomics23
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- Antimicrobial stewardship22
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- Diffraction experiment20
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- DNA variation17
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- Taxonomy15
- Epigenomics11
- Exometabolomics10
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- Computational chemistry7
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- WGS6
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- Tool
- Galaxy
- FastQC36
- SAMtools27
- MultiQC26
- Bioconductor24
- BWA21
- REDCap20
- BEDTools17
- Data Stewardship Wizard17
- fastp16
- scikit-learn16
- JBrowse15
- SCANPY15
- ggplot215
- Falco14
- DeepTools13
- BLAST12
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- RStudio11
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- GEMINI10
- scikit-image10
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- NanoPlot9
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- Bandage8
- FASTX-Toolkit8
- FreeBayes8
- BCFtools7
- BamTools7
- RDMkit7
- Trim Galore7
- msConvert7
- seqtk7
- Biopython6
- Flye6
- HISAT26
- MAFFT6
- MaxQuant6
- Minimap26
- Ontology Lookup Service6
- Open Babel6
- Unicycler6
- Workflow4Metabolomics6
- gffread6
- BridgeDb5
- COPASI5
- DESeq25
- Galactic Circos5
- MetaPhlAn5
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
- SRA Software Toolkit5
- Salmon5
- anndata5
- annotatemyids5
- compute_sequence_length5
- kraken25
- xcms5
- Bowtie 24
- Bwa-mem24
- CellProfiler4
- Chipster4
- Diamond4
- European Nucleotide Archive (ENA)4
- GOseq4
- KrakenTools4
- MACS4
- MSstats4
- Merqury4
- Newick Utilities4
- QualiMap4
- StringTie4
- The Protein Data Bank (PDB)4
- UniProt4
- bx-python4
- gffcompare4
- mothur4
- snpEff4
- Apollo3
- Bakta3
- Bracken3
- BridgeDbR3
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DISEASES3
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterMine3
- InterMineR3
- InterProScan (EBI)3
- MGnify (was EBI Metagenomics)3
- OMArk3
- OMERO3
- R3
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- Standard database or policy
- The FAIR Principles1
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- Content provider
- GTN374
- BioData.pt1
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- Keyword
- biodiversity46
- microgalaxy40
- Proteomics38
- Statistics and Machine Learning34
- Single Cell33
- Ecology29
- Genome Annotation28
- Transcriptomics23
- Assembly22
- Microbiome21
- Imaging20
- Variant Analysis17
- jbrowse116
- Earth Data Science15
- Using Galaxy and Managing your Data15
- interactive-tools15
- prokaryote15
- gmod14
- Sequence Analysis12
- Epigenetics11
- Introduction to Galaxy Analyses11
- covid1911
- earth-system11
- work-in-progress11
- Image segmentation10
- Metabolomics10
- assembly10
- eukaryote10
- metabolomics10
- 10x9
- label-free9
- one-health9
- plants9
- DDA8
- metagenomics8
- ocean8
- Computational Chemistry7
- Digital Humanities7
- EBV dataset7
- EBV workflow7
- nanopore7
- paper-replication7
- workflows7
- MIGHTS6
- Overlay6
- Visualisation6
- cyoa6
- data management6
- ecology6
- español6
- illumina6
- metabarcoding6
- transcriptomics6
- Foundations of Data Science5
- bacteria5
- deconvolution5
- deutsch5
- italiano5
- label-TMT115
- mouse5
- single-cell5
- virology5
- 16S4
- Conversion4
- DIA4
- Evolution4
- FAIR4
- Multi-channel image4
- Object feature extraction4
- QC4
- collections4
- exposomics4
- galaxy-intro4
- gc-ms4
- genetic composition EBV class4
- lc-ms4
- pangeo4
- ChIP-seq3
- Deep learning3
- Image annotation3
- RAD-seq3
- amr3
- bulk3
- climate3
- computational-chemistry3
- data import3
- deep-learning3
- epigenetics3
- essential genes3
- eukaryota3
- gbif3
- human3
- imaging3
- mass spectrometry imaging3
- metatranscriptomics3
- modeling3
- pacbio3
- proteogenomics3
- rna-seq3
- sc_formats3
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- Competency level
- Beginner285
- Intermediate80
- Advanced9
- Not specified1
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- Licence
- Creative Commons Attribution 4.0 International374
- Creative Commons Attribution Non Commercial 4.0 International1
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- Target audience
- Students370
- Galaxy Administrators2
- Instructors2
- PhD candidates1
- Researcher in life sciences1
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- Author
- Bérénice Batut48
- Saskia Hiltemann24
- Subina Mehta23
- Yvan Le Bras23
- Helena Rasche18
- Anne Fouilloux16
- Anthony Bretaudeau16
- Anton Nekrutenko14
- Björn Grüning14
- Marie Josse14
- Cristóbal Gallardo13
- Mehmet Tekman13
- Wolfgang Maier13
- Delphine Lariviere12
- James Johnson12
- Katherine Do12
- Maria Doyle12
- Simon Gladman12
- Anup Kumar11
- Pavankumar Videm11
- Pratik Jagtap11
- Melanie Föll10
- Wendi Bacon10
- Diana Chiang Jurado9
- Simon Bray9
- Kaivan Kamali8
- Timothy J. Griffin8
- Anna Syme7
- Daniel Blankenberg7
- Erwan Corre7
- Jeremy Goecks7
- Julia Jakiela7
- Junhao Qiu7
- Leonid Kostrykin7
- Matthias Fahrner7
- Nicola Soranzo7
- Paul Zierep7
- Paulo Cilas Morais Lyra Junior7
- Praveen Kumar7
- Stéphanie Robin7
- Alexandre Cormier6
- Anika Erxleben6
- Beatriz Serrano-Solano6
- Coline Royaux6
- Dave Clements6
- Emma Leith6
- Krzysztof Poterlowicz6
- Laura Leroi6
- Valentin Loux6
- Alex Ostrovsky5
- Daniela Schneider5
- Dechen Bhuming5
- Florian Christoph Sigloch5
- Fotis E. Psomopoulos5
- Joachim Wolff5
- Katarzyna Kamieniecka5
- Khaled Jum'ah5
- Lucille Delisle5
- Ray Sajulga5
- Riccardo Massei5
- Alireza Khanteymoori4
- Amirhossein Naghsh Nilchi4
- Clemens Blank4
- Florian Heyl4
- Gildas Le Corguillé4
- Helge Hecht4
- Hélène Chiapello4
- Khai Van Dang4
- Mallory Freeberg4
- Marisa Loach4
- Marius van den Beek4
- Mélanie Petera4
- Nadia Goué4
- Polina Polunina4
- Romane LIBOUBAN4
- Vivek Bhardwaj4
- Alyssa Pybus3
- Bazante Sanders3
- Belinda Phipson3
- Christopher Barnett3
- Engy Nasr3
- Fidel Ramirez3
- Jean-François Martin3
- Marie Crane3
- Miguel Roncoroni3
- Mo Heydarian3
- Morgan Howells3
- Toby Hodges3
- Torsten Seemann3
- Workflow4Metabolomics core team3
- Anne Pajon2
- Arthur Barreau2
- Brandon Pickett2
- Chao Zhang2
- Christoph Stritt2
- Clea Siguret2
- Daniela Brites2
- David Christiany2
- Deepti Varshney2
- Ekaterina Polkh2
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- Contributor
- Saskia Hiltemann330
- Björn Grüning266
- Helena Rasche261
- Bérénice Batut139
- Nicola Soranzo71
- Cristóbal Gallardo60
- Pavankumar Videm59
- Anthony Bretaudeau56
- Martin Čech47
- Niall Beard46
- Armin Dadras38
- Teresa Müller38
- Yvan Le Bras36
- Gildas Le Corguillé34
- Mehmet Tekman33
- Wendi Bacon33
- Wolfgang Maier33
- Beatriz Serrano-Solano32
- William Durand31
- Melanie Föll30
- Marie Josse29
- Subina Mehta28
- Anup Kumar25
- Nate Coraor22
- Simon Bray22
- Maria Doyle20
- Anne Fouilloux18
- Leonid Kostrykin18
- Tristan Reynolds18
- Deepti Varshney16
- Paul Zierep15
- Anton Nekrutenko14
- Julia Jakiela14
- Lucille Delisle14
- Daniela Schneider13
- Delphine Lariviere13
- Diana Chiang Jurado13
- Pratik Jagtap13
- Timothy J. Griffin12
- Marisa Loach11
- Marius van den Beek11
- Mélanie Petera11
- Pablo Moreno11
- Simon Gladman10
- Amirhossein Naghsh Nilchi9
- Anna Syme9
- Matthias Bernt9
- Stéphanie Robin9
- David López8
- Kaivan Kamali8
- Peter van Heusden8
- Verena Moosmann8
- Katherine Do7
- Paulo Cilas Morais Lyra Junior7
- Alexandre Cormier6
- Florian Heyl6
- Hans-Rudolf Hotz6
- Linelle Abueg6
- Mallory Freeberg6
- Morgan Howells6
- Alireza Khanteymoori5
- Bert Droesbeke5
- Clea Siguret5
- Clemens Blank5
- Fabio Cumbo5
- Riccardo Massei5
- Christopher Barnett4
- Coline Royaux4
- Dave Clements4
- Florian Christoph Sigloch4
- Khaled Jum'ah4
- Natalie Whitaker-Allen4
- Arthur Barreau3
- Bazante Sanders3
- Donny Vrins3
- Ekaterina Polkh3
- Engy Nasr3
- Enis Afgan3
- Jasper Ouwerkerk3
- Joachim Wolff3
- Katarzyna Kamieniecka3
- Mateo Boudet3
- Mateusz Kuzak3
- Miaomiao Zhou3
- Saim Momin3
- Swathi Nataraj3
- Timon Schlegel3
- Alex Ostrovsky2
- Anika Erxleben2
- Carlos Chee Mendonça2
- Christine Oger2
- Christoph Stritt2
- CicoZhang2
- Esteban Perez-Wohlfeil2
- Fidel Ramirez2
- Florence Combes2
- Fotis E. Psomopoulos2
- Graeme Tyson2
- Helge Hecht2
- Igor Makunin2
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- Resource type
- e-learning332
- slides42
- presentation1
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- Related resource
- Associated Workflows305
- Associated Training Datasets303
- Jupyter Notebook (with Solutions)2
- Jupyter Notebook (without Solutions)2
- DMPortal1
- elabFTW1
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- Node
- Portugal1
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- Collection
- ELIXIR Biodiversity Community5
- ELIXIR hCNV community - collection of courses and materials.1
- ELIXIR Federated Human Data Community1
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- Status
- Active1
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