Training materials
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e-learning
Microbial Variant Calling
• BeginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy … -
e-learning
Calling variants in non-diploid systems
• BeginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
e-learning
Essential genes detection with Transposon insertion sequencing
• BeginnerGenomics Microbiology Sequence analysis Mobile genetic elements Genome Annotation bacteria essential genes microgalaxy tnseq -
e-learning
Refining Genome Annotations with Apollo (prokaryotes)
•• IntermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 biodiversity gmod jbrowse1 microgalaxy … -
e-learning
Genome annotation with Prokka
• BeginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
e-learning
Removal of human reads from SARS-CoV-2 sequencing data
•• IntermediateSequence analysis Sequence analysis covid19 -
e-learning
Mapping
• BeginnerSequence analysis Mapping Sequence analysis deutsch español italiano -
e-learning
Quality Control
• BeginnerSequence analysis Sequence analysis deutsch español italiano -
slides
Mapping
• BeginnerSequence analysis Sequence analysis -
slides
Quality Control
• BeginnerSequence analysis Sequence analysis