France
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Development of a GA4GH-compliant, language-agnostic workflow execution service
biohackaton 2018
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x2Go
Cloud
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PDF
PacBio de novo genome assembly - Hands on exercise
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Variants: alignment and pre-treatment; GATK
Genomics
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Initiation to R programming and descriptive statistics
• beginnerR-programming Descriptive statistics Statistics Bioinformatics -
Getting started with Bioschemas
• beginnerBioschemas Standards -
Training materials
FAIR principles applied to bioinformatics
•• intermediateFAIR Reproducible Science Open science Data analysis Data processing -
Chip-seq: Pattern Analysis tutorial
Chip-seq NGS Pattern recognition
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Training materials
Plant Phenotyping Data managment (MIAPPE)
• beginnerPhenomics Plant biology Data management Annotation Data formatting Plant Phenotyping Data-format data sharing -
IFB Shiny training
•• intermediateR-programming Reproducible Science -
Online material, online course
Workshop on Resources for Plant Sciences, 2023
•• intermediatePlant biology service bundle eLearning EeLP plant science Data Visualization Gene Ontology Knowledge graph MIAPPE -
Webinar, Slides, Video
WheatIS DataDiscovery webinar
• beginnerData management wheat information system data discovery -
Variant Filtering
Genomics
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Exploring microbiomes with the MicroScope Platform
Annotation Genomics Metabolomics Microbial evolution Transcriptomics
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Chip Seq: Annotation and visualization Tutorial
Annotation Chip-seq Data Visualization NGS
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Sequencing 6000 chloroplast genomes : the PhyloAlps project
metagenomics
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Third generation sequencing : the revolution of long reads
Genomics
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Prototyping the new PSICQUIC 2.0
biohackaton 2018
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RGP finder: prediction of Genomic Islands
CDS Data visualization Genomics RGP
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Chip-seq: Functional Annotation tutorial
Chip-seq Functional Annotation NGS
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MG-RAST — experiences from processing a quarter million metagenomic data sets
metagenomics
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bio.tools & EDAM drop-in hackathon & discussions
biohackaton 2018
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PDF
Genome assembly with long reads
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200 billion sequences and counting: analysis, discovery and exploration of datasets with EBI Metagenomics
metagenomics
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Multiple Comparative Metagenomics using Multiset k-mer Counting
metagenomics
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From Samples to Data : Assuring Downstream Analysis with Upstream Planning
metagenomics
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Exploiting collisions between DNA molecules to characterize the genomic structures of complex communities
metagenomics
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NGS data exploration with the MicroScope Platform
Genomics NGS RNA-seq SNP Transcriptomics
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Gut metagenomics in cardiometabolic diseases
metagenomics
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Lecture, Presentation, Training materials
HemaFAIR Lecture 13 - A gentle introduction to federated learning
• beginnerMachine learning Data protection Data mining FAIR principles HemaFAIR HELIOS Federated Learning Healthcare
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Workshops and courses
Federated data analysis Training school & Hackathon
11 - 14 May 2026
Online
FAIR data Data management Data acquisition Data identity and mapping Data curation and archival Data governance Data protection Data Analysis FAIR Data Federated Analysis Federated data analysis Learning Hands-on Research Data Management -
Workshops and courses
HOW TO RUN A NF-CORE NEXTFLOW WORKFLOW ON GENOTOUL ? - 7 avril 2026
7 April 2026 @ 09:00 - 17:00
Castanet-Tolosan, France
Face-to-face
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Workshops and courses
Principes FAIR & Git Initiation
16 June 2026 @ 09:00 - 17:00
Roscoff
Face-to-face
-
Workshops and courses
Analyses Single Cell RNA-seq (ScRNA-seq) avec R
1 - 2 October 2026
Bordeaux, France
Face-to-face
-
Workshops and courses
Linux - Initiation / Linux for Beginners
17 June 2026 @ 09:00 - 17:00
Roscoff
Face-to-face
-
Workshops and courses
Initiation à R / R Initiation
22 June 2026 @ 09:00 - 17:00
Roscoff
Face-to-face
-
Workshops and courses
Manipulating & Visualizing Data with R
23 June 2026 @ 09:00 - 17:00
Roscoff
Face-to-face
-
Workshops and courses
Linux Avancé / Advanced Linux
18 June 2026 @ 09:00 - 17:00
Roscoff
Face-to-face
-
Workshops and courses
Analyses NGS avec R
24 - 25 September 2026
Bordeaux, France
Face-to-face
-
Workshops and courses
EB3I - Ecole de Bioinformatique niveau débutant 2026
15 - 20 November 2026
Face-to-face
-
Workshops and courses
Initiation à Galaxy / Galaxy Initiation
15 June 2026 @ 09:00 - 17:00
Roscoff
Face-to-face
-
Workshops and courses
Formation metabarcoding ABiMS SeBiMER
6 - 11 December 2026
Face-to-face
-
Workshops and courses
FAIR Bioinfo Grand-Ouest
19 - 20 May 2026
Face-to-face
-
Workshops and courses
Langage R : introduction
1 - 3 June 2026
Bordeaux, France
Face-to-face
-
Workshops and courses
Utilisation du cluster - SLURM / Cluster usage - SLURM
19 June 2026 @ 09:00 - 17:00
Roscoff
Face-to-face
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IFB French Institute of Bioinformatics
The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research...
149 training materials15 events (502 past events)IFB French Institute of Bioinformatics http://www.france-bioinformatique.fr https://tess.elixir-europe.org/content_providers/ifb-french-institute-of-bioinformatics The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research infrastructure, ELIXIR. /system/content_providers/images/000/000/049/original/logo-ifb-couleur.svg?1663599376 -
Workflow4metabolomics
In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing,...
Workflow4metabolomics https://workflow4metabolomics.org https://tess.elixir-europe.org/content_providers/workflow4metaolomics In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing, normalization, quality control, statistical analysis (Univariate, Multivariate PLS/OPLS) and annotation steps. Those modular and extensible workflows are composed with existing components (XCMS and CAMERA packages, etc.) but also a whole suite of complementary homemade tools. This implementation is accessible through a web interface, which guarantees the parameters completeness. The advanced features of Galaxy have made possible the integration of components from different sources and of different types. Thus, an extensible Virtual Research Environment (VRE) is offered to metabolomics communities (platforms, end users, etc.), and enables preconfigured workflows sharing for new users, but also experts in the field. /system/content_providers/images/000/000/659/original/17082156.png?1667905557
Activity log
