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Scop3P
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Presentation
Reusing existing data
Data management data licenses software licenses data journal -
Presentation
Reproducible data analysis with RStudio, github and Rmarkdown
Data architecture, analysis and design Data management Data analysis -
Presentation
Valorisation and intellectual properties in research data management
Data management intellectual property protection -
Presentation
Preserve, publish and share your data
Data curation and archival Data management data formats ELIXIR Core resources FAIR data submission -
e-learning
Introduction to Protein Structure Analysis
Visualisation Protein structure visualisation -
Online material, hands-on tutorial
Introduction to Docker and Singularity
• beginnerReproducibility Container Singularity -
e-learning
Data Management and Writing a Data Management Plan
• beginnerData management -
e-learning
Basic statistics in Prism
• beginnerStatistics and probability statistics -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) Structure prediction -
Presentation, course materials
Introduction to Nextflow workshop
• beginnerWorkflows Nextflow DSL2 -
Training materials
Containers & Workflow pipelines workshop
•• intermediateContainers Nextflow -
slides, R Shiny application
Proteomics Data Analysis (PDA)
•• intermediateProteomics proteomics quantitative proteomics -
slides, scripts
Bioinformatics for Proteomics
• beginnerProteomics Proteomics -
hands-on tutorial
A tour of Machine Learning
•• intermediateMachine learning Classification Deep Learning Machine Learning -
hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
e-learning
Basic statistics theory
• beginnerStatistics and probability statistics -
hands-on tutorial
Introduction to Research Data Management
• beginnerData quality management Data curation and archival Research Data Management Research Publishing -
Jupyter notebooks
Gentle hands-on introduction to Python programming
• beginnerSoftware engineering Python programming -
hands-on tutorial
Containerise data analysis with Docker and Apptainer
•• intermediateDocker image Software engineering Apptainer Computing environment Container Docker -
online tutorial
Introduction to Single Cell ATAC-seq
• beginnerATAC-seq ArchR -
e-learning
Introduction to Linux command line
• beginnerOperating system name Linux -
hands-on tutorial
AlphaFold and friends on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction AlphaFold Database (13181) Structure prediction -
hands-on tutorial
Programming in Python: master your first project
• beginnerSoftware engineering data visualisation programming -
hands-on tutorial
Nextflow for reproducible and automated data analysis
•• intermediateWorkflow Software engineering Computing environment Nextflow Reproducible data analysis Workflow -
online tutorial
Electronic Lab Notebook (ELN): essentials
• beginnerData management Data curation and archival electronic lab notebook research data management -
e-learning
Introduction to CLC Main Workbench
• beginnerSequence alignment Sequence Analysis -
hands-on tutorial
Single cell RNASeq analysis
•• intermediateTranscriptomics Single-cell sequencing Single cell data transcriptomics -
e-learning
Introduction to the General Data Protection Regulation (GDPR)
• beginnerProtein structure analysis Machine learning Structure prediction Best practises Data Protection General Data Protection Regulation -
hands-on tutorial
Introduction to Git and Github
• beginnerSoftware engineering Git Github Version control
Activity log

