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Scop3P
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Presentation
Reusing existing data
Data management data licenses software licenses data journal -
Presentation
Reproducible data analysis with RStudio, github and Rmarkdown
Data architecture, analysis and design Data management Data analysis -
Presentation
Valorisation and intellectual properties in research data management
Data management intellectual property protection -
Presentation
Preserve, publish and share your data
Data curation and archival Data management data formats ELIXIR Core resources FAIR data submission -
e-learning
Introduction to Protein Structure Analysis
Visualisation Protein structure visualisation -
Online material, hands-on tutorial
Introduction to Docker and Singularity
• BeginnerReproducibility Container Singularity -
e-learning
Data Management and Writing a Data Management Plan
• BeginnerData management -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• IntermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) Structure prediction -
Presentation, course materials
Introduction to Nextflow workshop
• BeginnerWorkflows Nextflow DSL2 -
Training materials
Containers & Workflow pipelines workshop
•• IntermediateContainers Nextflow -
slides, R Shiny application
Proteomics Data Analysis (PDA)
•• IntermediateProteomics proteomics quantitative proteomics -
slides, scripts
Bioinformatics for Proteomics
• BeginnerProteomics Proteomics -
hands-on tutorial
Bulk RNASeq analysis
•• IntermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
e-learning
Basic statistics in Prism
• BeginnerStatistics and probability statistics -
hands-on tutorial
A tour of Machine Learning
•• IntermediateMachine learning Classification Deep Learning Machine Learning -
Presentation, Exercise
Agentic Coding with GitHub Copilot
• BeginnerComputer science Artificial Intelligence Coding -
e-learning
Basic statistics theory
• BeginnerStatistics and probability statistics -
hands-on tutorial
AlphaFold and friends on the HPC
•• IntermediateProtein structure analysis Machine learning Structure prediction AlphaFold Database (13181) Structure prediction -
video
M365 Copilot essentials
• BeginnerCopilot Generative AI -
hands-on tutorial
NGS analysis
•• IntermediateSequencing NGS Next Generation Sequencing -
hands-on tutorial
Gentle Introduction to Python
• BeginnerSoftware engineering Python script Programming Python -
e-learning
Introduction to the General Data Protection Regulation (GDPR)
• BeginnerProtein structure analysis Machine learning Structure prediction Best practises Data Protection General Data Protection Regulation -
Jupyter notebooks
Gentle hands-on introduction to Python programming
• BeginnerSoftware engineering Python programming -
e-learning
Introduction to CLC Main Workbench
• BeginnerSequence alignment Sequence Analysis -
online tutorial
Electronic Lab Notebook (ELN): essentials
• BeginnerData curation and archival Data management electronic lab notebook research data management -
hands-on tutorial
Single cell RNASeq analysis
•• IntermediateTranscriptomics Single-cell sequencing Single cell data transcriptomics -
hands-on tutorial
Introduction to Git and Github
• BeginnerSoftware engineering Git Github Version control -
hands-on tutorial
Introduction to Protein Design
•• IntermediateProtein structure analysis Machine learning Structure prediction AlphaFold Structure design Structure prediction -
e-learning
Introduction to Linux command line
• BeginnerOperating system name Linux
Activity log

