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Date: 21 - 24 June 2022

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Program

Handling mapping tools suitable for ILLUMINA and ONT data (bwa, minimap2)
SNP detection from mapping of short reads against a reference genome: SNP calling, filters and SNP annotation. Examples of possible studies based on SNP arrays
Detecting Structural Variations (SV) in short and long reads (breakdancer, sniffle)
SV detection from genome assembly and comparison (minimap2, nucmer, assemblytics, siry)

Venue: avenue Agropolis

City: montpellier

Country: France

Postcode: 34000

Organizer: South Green (http://www.southgreen.fr)

Event types:

Introduction to Structural variant detection analyses 2022