Training materials
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ELIXIR TeSS
hands-on tutorial
Build a species tree from gene trees in your browser
•• IntermediateASTER ASTRAL Newick gene trees phylogenomics species tree -
ELIXIR TeSS
hands-on tutorial
Find which genes your variants fall in, in your browser
• BeginnerBED VCF bedtools intersect genes variant annotation workflow -
ELIXIR TeSS
hands-on tutorial
Build a viral consensus genome in your browser
• BeginnerViralConsensus consensus genome minimap2 samtools viral genomics workflow -
ELIXIR TeSS
hands-on tutorial
Assemble a small genome from reads in your browser
• BeginnerPAF contigs de novo assembly fermi-lite minimap2 workflow -
ELIXIR TeSS
hands-on tutorial
Compare two related genomes in your browser
• BeginnerPAF genome comparison minimap2 phage sequence identity workflow -
ELIXIR TeSS
hands-on tutorial
Find where a genome is poorly covered, in your browser
• Beginneramplicon dropout coverage gawk samtools sequencing depth workflow -
ELIXIR TeSS
hands-on tutorial
Explore and filter variants in your browser
• BeginnerVCF bcftools genetic variants variant filtering workflow -
ELIXIR TeSS
hands-on tutorial
Find the genes in a genome in your browser
• BeginnerProdigal gene prediction genome annotation phage workflow -
ELIXIR TeSS
hands-on tutorial
Map sequencing reads to a reference in your browser
• BeginnerWebAssembly genomics minimap2 read mapping samtools workflow -
ELIXIR TeSS
hands-on tutorial
Analyse amplicon sequencing of a virus in your browser
•• Intermediateamplicon sequencing genomic surveillance iVar primer trimming virus workflow