EMBL-EBI
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PhenoMeNal: accessing metabolomics workflows in Galaxy
• BeginnerMetabolomics Chemical biology Galaxy -
Video
A common framework for designing portable federated pipelines
•• IntermediateData architecture, analysis and design data access federated data analysis -
Installation instructions, Manual
How to use Common Workflow Language
• BeginnerWorkflows commonwl common workflow language CWL Workflows eLearning EeLP -
Recorded webinar, Slidedeck
Europe PMC API workshop: Part two
API Literature search Literature database search Europe PMC Annotations
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Online material, Recording, hands-on tutorial
MaBoSS: a tool for modelling biological systems
• BeginnerMathematical modelling cancer Signalling boolean modelling logical modelling -
Recorded webinar
Exploring metabolite metabolism using the Enzyme Portal
Enzymes Metabolomics
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Training materials, Video
GA4GH Passports and ELIXIR AAI
•• IntermediateAAI GA4GH Passports Auhtorisation -
Recorded webinar
Searching and browsing scientific publications with the new Europe PMC
Literature search Data links preprints
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Video
Status Update Code of Conduct: Teaming up & Talking about it
•• IntermediateGDPR Healthcare research data harmonization -
Webinar
EBI Metagenomics: analysing and exploring metagenomics data
Metagenomics Metagenomics MGnify Sequence Analysis Microbiology
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e-learning
2024 highlights: A year of on-demand training
Bioinformatics Introduction
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Video
Useful ontologies for harmonizing cohort data
• BeginnerData integration and warehousing Data management Ontology and terminology Ontologies Cohort data data annotation -
Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• BeginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies -
Video
Annotating data using next generation biobanking ontology (NGBO)
• BeginnerData integration and warehousing Ontology and terminology Standards Ontologies Data Integration data harmonization Standardised vocabulary -
Video
FAIR software tools
• BeginnerSoftware engineering FAIR software tools Software -
Video
Making cohort data FAIR
• BeginnerData integration and warehousing Data management FAIR data Cohort data Ontologies Standards -
Video
Introduction to FAIR principles - Open science through FAIR health data networks: dream or reality?
• BeginnerData management FAIR data Health data Open science -
Video
Data Gravity in the Life Sciences: Lessons learned from the HCA and other federated data projects
•• IntermediateData architecture, analysis and design Cloud computing Data analysis Standards Translational research -
Series of videos
CINECA discovery service catalog
•• IntermediateCohort data Standards federated data analysis Beacon queries -
Tutorial
MGnify quick tour
Metagenomics Metagenomics Sequence analysis MGnify Microbiology
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e-learning
Structural volume data
Electron microscopy Protein structure analysis Structural biology Structural bioinformatics Segmentation Volume matching
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Life Sciences Literature Database
Finding the data behind research publications with Europe PMC
Biomedical Literature Data links databases External links
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Life Sciences Literature Database
Discovering scientific evidence using Europe PMC SciLite annotation
Biomedical Literature Annotations Literature search SciLite Protein structure viewer Chemical viewer
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e-learning
Cellular Microscopy Phenotype Ontology: Quick tour
Ontology and terminology CMPO Microscopy Imaging Controlled vocabulary
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Course materials
Managing a Bioinformatics Core Facility: CABANA Virtual Workshop Handbook
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Recorded webinar
Annotate your proteins with the UniProt Functional Annotation system UniFire
Proteins Function analysis
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Webinar
Preprint discovery 101: Tips & tricks for authors and readers
Europe PMC, Preprints
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Webinar
Integrating publications into bioinformatics analysis
Europe PMC REST API Bioinformatic analysis
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Recorded webinar
Annotating your own variation data with the Ensembl Variant Effect Predictor (VEP)
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Webinar
Europe PMC, programmatically
Literature search Programmatic Access Europe PMC REST API Biomedical Literature
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FEBS: In Silico Systems Biology: Network Reconstruction, Analysis and Network-based Modelling
No date given
Face-to-face
HDRUK -
Using the Ensembl Genome Browser
No date given
Face-to-face
HDRUK -
EBI - Joint EBI-Wellcome Trust Proteomics Bioinformatics workshop
No date given
Face-to-face
HDRUK -
Workshops and courses
Metagenomics bioinformatics at MGnify
14 - 18 September 2026
United Kingdom
Face-to-face
-
Workshops and courses
Proteomics bioinformatics
12 - 16 July 2027
United Kingdom
Face-to-face
-
Workshops and courses
Introduction to RNA-seq and functional interpretation
22 - 26 February 2027
Online
Function analysis RNA-Seq analysis Gene expression profile RNA-Seq Transcriptome assembly Transcriptomics Gene transcripts Pipeline implementation -
Workshops and courses
Causality in biomedicine: going beyond associations
4 - 9 October 2026
United Kingdom
Face-to-face
Public health and epidemiology Statistics and probability Genomics Systems biology uncertainty quantification Multi-modality Genomics health informatics Causality -
Workshops and courses
Interpreting the effects of genetic variants on protein structure and function
26 November 2026 @ 09:00 - 17:00
Online
Variant effect prediction Protein structure Ensembl Ensembl Variant Effect Predictor UniProt: The Universal Protein Resource Protein Data Bank in Europe AlphaFold Database Genetic variants -
Workshops and courses
Introduction to multi-omics data integration and visualisation
8 - 12 March 2027
United Kingdom
Face-to-face
FAIR data Multiomics Systems biology Multi-omics data integration Cosmos Omnipath Cytoscape -
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
16 - 20 November 2026
United Kingdom
Face-to-face
-
Workshops and courses
Bioinformatics for immunologists
13 - 17 July 2026
United Kingdom
Face-to-face
IntAct Molecular Interaction Database Reactome pathways database Ensembl Expression Atlas Gene expression (gene-expression) immunology transcriptomics analysis flow cytometry multiomics biological pathways immune receptor analysis -
Workshops and courses
Single-cell RNA-seq analysis with Python
12 - 16 April 2027
Online
-
Workshops and courses
Introduction to metabolomics analysis
17 - 21 May 2027
United Kingdom
Face-to-face
MetaboLights: Metabolomics repository and reference database Galaxy for metabolomics MS Imaging Metabolite identification -
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
15 - 19 November 2027
United Kingdom
Face-to-face
-
Workshops and courses
Structural bioinformatics
13 - 17 September 2027
Online
-
Workshops and courses
Exploring microbial communities through metagenomics bioinformatics
28 June - 2 July 2027
Online
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Workshops and courses
Data science for life scientists
14 - 18 June 2027
United Kingdom
Face-to-face
Data science Python Data visualisation Statistics Machine learning -
Workshops and courses
Structural bioinformatics
19 - 23 October 2026
Online
Structure prediction Protein sequence Structure analysis AlphaFold Protein function Structural biology Atomic resolution Fold and topology -
Workshops and courses
Small molecules and their protein targets: interactions, function, and classification
10 September 2026 @ 09:00 - 17:00
Online
ChEMBL Protein Data Bank in Europe
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CINECA PROJECT
CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon...
17 training materials0 events (3 past events)CINECA PROJECT https://www.cineca-project.eu/ https://tess.elixir-europe.org/content_providers/cineca CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon 2020 programme and the Canadian Institutes of Health Research. /system/content_providers/images/000/000/140/original/CINECA_logo.png?1589875546 -
European Bioinformatics Institute (EBI)
EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academia and industry.
498 training materials19 events (1944 past events)European Bioinformatics Institute (EBI) http://www.ebi.ac.uk https://tesshub.org/content_providers/european-bioinformatics-institute-ebi EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academia and industry. /system/content_providers/images/000/000/002/original/EBI_logo.png?1469458224
Activity log
