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PhenoMeNal: accessing metabolomics workflows in Galaxy
• beginnerMetabolomics Chemical biology Galaxy -
Recorded webinar, Slidedeck
Europe PMC API workshop: Part two
API Literature search Literature database search Europe PMC Annotations
-
Recorded webinar
Exploring metabolite metabolism using the Enzyme Portal
Enzymes Metabolomics
-
Webinar
EBI Metagenomics: analysing and exploring metagenomics data
Metagenomics Metagenomics MGnify Sequence Analysis Microbiology
-
e-learning
2024 highlights: A year of on-demand training
Bioinformatics Introduction
-
Tutorial
MGnify quick tour
Metagenomics Metagenomics Sequence analysis MGnify Microbiology
-
Recorded webinar
InterProScan
Gene and protein families Function analysis
-
Course materials
Microscopy data analysis: machine learning and the BioImage Archive
-
e-learning
Structural volume data
Electron microscopy Protein structure analysis Structural biology Structural bioinformatics Segmentation Volume matching
-
e-learning
Data-driven plant sciences: A curated collection of EMBL-EBI on-demand training
Plant biology Machine learning Data architecture, analysis and design Database management Genotype and phenotype Data standards Spatial transcriptomics
-
e-learning
Methods and resources for omics studies: A curated collection of EMBL-EBI on-demand training
Omics Data visualisation Genomics Proteomics Metabolomics Transcriptomics Spatial omics multi-omics data integration transcriptomics
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Life Sciences Literature Database
Finding the data behind research publications with Europe PMC
Biomedical Literature Data links databases External links
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Life Sciences Literature Database
Discovering scientific evidence using Europe PMC SciLite annotation
Biomedical Literature Annotations Literature search SciLite Protein structure viewer Chemical viewer
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Course materials
From sequences to structures: Protein characterisation using EMBL-EBI APIs: EMBL-EBI resources in practice
-
Recorded webinar
EurOPDX Data Portal: a repository of patient-derived xenograft models
Drug discovery
-
Recorded webinar
A guide to sequence similarity search for biomolecular sequences
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Course materials
Managing a Bioinformatics Core Facility: CABANA Virtual Workshop Handbook
-
Recorded webinar
Annotate your proteins with the UniProt Functional Annotation system UniFire
Proteins Function analysis
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e-learning
PDBe: Searching the Protein Data Bank
Protein structure analysis Proteins Structural biology Macromolecular structures PDBe Electron microscopy
-
Webinar
Preprint discovery 101: Tips & tricks for authors and readers
Europe PMC, Preprints
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Webinar
Integrating publications into bioinformatics analysis
Europe PMC REST API Bioinformatic analysis
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Recorded webinar
Open access: publications and preprints
-
Recorded webinar
Retrieving biological data from EMBL-EBI resources using Dbfetch
-
Recorded webinar
Biocuration Q&A session
Data curation and archival Natural language processing Software engineering Database management
-
Recorded webinar
Introductory bioinformatics Q&A session: proteins and structures
Bioinformatics
-
Recorded webinar
An introduction to the COVID-19 Data Portal
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Webinar
Europe PMC, programmatically
Literature search Programmatic Access Europe PMC REST API Biomedical Literature
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Webinar
Text mining: Key concepts and applications
Literature search Text mining Europe PMC Biomedical Literature
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e-learning
2022 highlights
Bioinformatics Introduction
-
Recorded webinar
Single-cell and spatial omics technologies in plant science
Omics Epigenomics Transcriptomics
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Workshops and courses
UniProt
2 October 2025 - 7 May 2026
Online
protein Function analysis Protein variants Annotation Sequence analysis UniProt: The Universal Protein Resource protein -
Workshops and courses
Accessing structural data programmatically with PDBe
6 May - 17 June 2026
Online
Protein Data Bank in Europe Structural biology Structural data API PDBe AFDB -
Workshops and courses
From sequences to structures: protein characterisation using EMBL-EBI APIs
2 June 2026 @ 09:00 - 17:00
Online
Sequence alignment Protein sequence analysis Structure prediction Workflow format Job Dispatcher UniProt: The Universal Protein Resource InterPro Protein Data Bank in Europe AlphaFold Database Proteins -
Workshops and courses
Creating complex PDBe API queries
3 June 2026 @ 09:00 - 17:00
Online
Structural biology Protein Data Bank in Europe Structural biology Structural data PDBe API -
Workshops and courses
PDBe tools in GitHub
10 June 2026 @ 09:00 - 17:00
Online
Structural biology Protein Data Bank in Europe Structural biology Structural data PDBe API -
Workshops and courses
Data science for life scientists
15 - 19 June 2026
United Kingdom
Face-to-face
Data science Python Data visualisation Statistics Machine learning -
Workshops and courses
Introduction to AlphaFold Database programmatic access
17 June 2026 @ 09:00 - 17:00
Online
Structural biology AlphaFold Database Protein Data Bank in Europe Structural biology Structural data PDBe AFDB API -
Workshops and courses
Proteomes in UniProt – explore and analyse the proteome resource
18 June 2026 @ 09:00 - 17:00
Online
Proteomics Proteins UniProt: The Universal Protein Resource Proetome resource UniProt Knowledgebase -
Workshops and courses
Accessing RNA data programmatically with the Rfam and RNAcentral APIs
25 June 2026 @ 09:00 - 17:00
Online
RNA sequence RNA secondary structure Rfam RNAcentral RNA RNA family RNA secondary structure API -
Workshops and courses
Proteomics bioinformatics
6 - 10 July 2026
United Kingdom
Face-to-face
-
Workshops and courses
Bioinformatics for immunologists
13 - 17 July 2026
United Kingdom
Face-to-face
IntAct Molecular Interaction Database Reactome pathways database Ensembl Expression Atlas Gene expression (gene-expression) immunology transcriptomics analysis flow cytometry multiomics biological pathways immune receptor analysis -
Workshops and courses
Small molecules and their protein targets: interactions, function and classification
10 September 2026 @ 09:00 - 17:00
Online
ChEMBL Protein Data Bank in Europe -
Workshops and courses
Metagenomics bioinformatics at MGnify
14 - 18 September 2026
United Kingdom
Face-to-face
-
Workshops and courses
Causality in biomedicine: going beyond associations
4 - 9 October 2026
United Kingdom
Face-to-face
Public health and epidemiology Statistics and probability Genomics Systems biology uncertainty quantification Multi-modality Genomics health informatics Causality -
Workshops and courses
Structural bioinformatics
19 - 23 October 2026
Online
-
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
16 - 20 November 2026
United Kingdom
Face-to-face
-
Workshops and courses
Interpreting the effects of genetic variants on protein structure and function
26 November 2026 @ 09:00 - 17:00
Online
Variant effect prediction Protein structure Ensembl Ensembl Variant Effect Predictor UniProt: The Universal Protein Resource Protein Data Bank in Europe AlphaFold Database Genetic variants -
Workshops and courses
Introduction to RNA-seq and functional interpretation
22 - 26 February 2027
Online
RNA-Seq analysis Function analysis Gene expression profile RNA-Seq Transcriptome assembly Transcriptomics Gene transcripts Pipeline implementation -
Workshops and courses
Introduction to multi-omics data integration and visualisation
8 - 12 March 2027
United Kingdom
Face-to-face
FAIR data Multiomics Systems biology Multi-omics data integration Cosmos Omnipath Cytoscape -
Workshops and courses
Single-cell RNA-seq analysis with Python
12 - 16 April 2027
Online
-
Workshops and courses
Introduction to metabolomics analysis
17 - 21 May 2027
United Kingdom
Face-to-face
MetaboLights: Metabolomics repository and reference database Galaxy for metabolomics MS Imaging Metabolite identification -
Workshops and courses
Data science for life scientists
14 - 18 June 2027
United Kingdom
Face-to-face
Data science Python Data visualisation Statistics Machine learning -
Workshops and courses
Metagenomics bioinformatics
28 June - 2 July 2027
Online
-
Workshops and courses
Proteomics bioinformatics
5 - 9 July 2027
United Kingdom
Face-to-face
-
Workshops and courses
Structural bioinformatics
13 - 17 September 2027
Online
-
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
15 - 19 November 2027
United Kingdom
Face-to-face
-
EBI - Joint EBI-Wellcome Trust Proteomics Bioinformatics workshop
No date given
Face-to-face
HDRUK -
Using the Ensembl Genome Browser
No date given
Face-to-face
HDRUK -
FEBS: In Silico Systems Biology: Network Reconstruction, Analysis and Network-based Modelling
No date given
Face-to-face
HDRUK
Activity log
