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PhenoMeNal: accessing metabolomics workflows in Galaxy
• BeginnerMetabolomics Chemical biology Galaxy -
Recorded webinar, Slidedeck
Europe PMC API workshop: Part two
API Literature search Literature database search Europe PMC Annotations
-
Recorded webinar
Exploring metabolite metabolism using the Enzyme Portal
Enzymes Metabolomics
-
Recorded webinar
Searching and browsing scientific publications with the new Europe PMC
Literature search Data links preprints
-
Webinar
EBI Metagenomics: analysing and exploring metagenomics data
Metagenomics Metagenomics MGnify Sequence Analysis Microbiology
-
e-learning
2024 highlights: A year of on-demand training
Bioinformatics Introduction
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Tutorial
MGnify quick tour
Metagenomics Metagenomics Sequence analysis MGnify Microbiology
-
e-learning
Structural volume data
Electron microscopy Protein structure analysis Structural biology Structural bioinformatics Segmentation Volume matching
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Life Sciences Literature Database
Finding the data behind research publications with Europe PMC
Biomedical Literature Data links databases External links
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Life Sciences Literature Database
Discovering scientific evidence using Europe PMC SciLite annotation
Biomedical Literature Annotations Literature search SciLite Protein structure viewer Chemical viewer
-
e-learning
Cellular Microscopy Phenotype Ontology: Quick tour
Ontology and terminology CMPO Microscopy Imaging Controlled vocabulary
-
Course materials
Managing a Bioinformatics Core Facility: CABANA Virtual Workshop Handbook
-
Recorded webinar
Annotate your proteins with the UniProt Functional Annotation system UniFire
Proteins Function analysis
-
Webinar
Preprint discovery 101: Tips & tricks for authors and readers
Europe PMC, Preprints
-
Webinar
Integrating publications into bioinformatics analysis
Europe PMC REST API Bioinformatic analysis
-
Recorded webinar
Annotating your own variation data with the Ensembl Variant Effect Predictor (VEP)
-
Webinar
Europe PMC, programmatically
Literature search Programmatic Access Europe PMC REST API Biomedical Literature
-
Webinar
Text mining: Key concepts and applications
Literature search Text mining Europe PMC Biomedical Literature
-
e-learning
2022 highlights
Bioinformatics Introduction
-
Recorded webinar
Data submission for genome-wide association studies at the GWAS Catalog
GWAS study Data curation and archival
-
Webinar
How to Share Text Mining Results in Biology
Europe PMC Text mining Literature search
-
Recorded webinar
Single-cell and spatial omics technologies in plant science
Omics Epigenomics Transcriptomics
-
Webinar
Effective Literature Research with Europe PMC
• BeginnerEurope PMC Biomedical Literature Literature search -
e-learning
ResOps: Cloud-native tools and technology for researchers
Computer science Data architecture, analysis and design Software engineering
-
Recorded webinar
Programmatic access to UniProt using Python
Proteins
-
Recorded webinar
A guide to RNA families
RNA
-
Recorded webinar
A guide to identifying and prioritising drug targets with the Open Targets Platform
Drug discovery
-
e-learning
European Variation Archive: Quick tour
Nucleic acid sequence Genetic variation Variation data Short genetic variants Structural variants EVA
-
e-learning
Gene–environment interactions in shaping human health and disease: A curated collection of EMBL-EBI on-demand training
Human biology Human genetics GWAS study Environmental sciences gene-environment interaction human ecosystem human health
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Course materials
Proteomics bioinformatics
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Workshops and courses
Bioinformatics for immunologists
13 - 17 July 2026
United Kingdom
Face-to-face
IntAct Molecular Interaction Database Reactome pathways database Ensembl Expression Atlas Gene expression (gene-expression) immunology transcriptomics analysis flow cytometry multiomics biological pathways immune receptor analysis -
Workshops and courses
Small molecules and their protein targets: interactions, function, and classification
10 September 2026 @ 09:00 - 17:00
Online
ChEMBL Protein Data Bank in Europe -
Workshops and courses
Metagenomics bioinformatics at MGnify
14 - 18 September 2026
United Kingdom
Face-to-face
-
Workshops and courses
Causality in biomedicine: going beyond associations
4 - 9 October 2026
United Kingdom
Face-to-face
Public health and epidemiology Statistics and probability Genomics Systems biology uncertainty quantification Multi-modality Genomics health informatics Causality -
Workshops and courses
Structural bioinformatics
19 - 23 October 2026
Online
Structure prediction Protein sequence Structure analysis AlphaFold Protein function Structural biology Atomic resolution Fold and topology -
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
16 - 20 November 2026
United Kingdom
Face-to-face
-
Workshops and courses
Interpreting the effects of genetic variants on protein structure and function
26 November 2026 @ 09:00 - 17:00
Online
Variant effect prediction Protein structure Ensembl Ensembl Variant Effect Predictor UniProt: The Universal Protein Resource Protein Data Bank in Europe AlphaFold Database Genetic variants -
Workshops and courses
Introduction to RNA-seq and functional interpretation
22 - 26 February 2027
Online
Function analysis RNA-Seq analysis Gene expression profile RNA-Seq Transcriptome assembly Transcriptomics Gene transcripts Pipeline implementation -
Workshops and courses
Introduction to multi-omics data integration and visualisation
8 - 12 March 2027
United Kingdom
Face-to-face
FAIR data Multiomics Systems biology Multi-omics data integration Cosmos Omnipath Cytoscape -
Workshops and courses
Single-cell RNA-seq analysis with Python
12 - 16 April 2027
Online
-
Workshops and courses
Introduction to metabolomics analysis
17 - 21 May 2027
United Kingdom
Face-to-face
MetaboLights: Metabolomics repository and reference database Galaxy for metabolomics MS Imaging Metabolite identification -
Workshops and courses
Data science for life scientists
14 - 18 June 2027
United Kingdom
Face-to-face
Data science Python Data visualisation Statistics Machine learning -
Workshops and courses
Exploring microbial communities through metagenomics bioinformatics
28 June - 2 July 2027
Online
-
Workshops and courses
Proteomics bioinformatics
12 - 16 July 2027
United Kingdom
Face-to-face
-
Workshops and courses
Structural bioinformatics
13 - 17 September 2027
Online
-
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
15 - 19 November 2027
United Kingdom
Face-to-face
-
FEBS: In Silico Systems Biology: Network Reconstruction, Analysis and Network-based Modelling
No date given
Face-to-face
HDRUK -
EBI - Joint EBI-Wellcome Trust Proteomics Bioinformatics workshop
No date given
Face-to-face
HDRUK -
Using the Ensembl Genome Browser
No date given
Face-to-face
HDRUK
Activity log
